Experiment: 8 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0646 and DvMF_0647 are separated by 53 nucleotides DvMF_0647 and DvMF_0648 are separated by 75 nucleotides DvMF_0648 and DvMF_0649 are separated by 14 nucleotides DvMF_0649 and DvMF_0650 are separated by 484 nucleotides
DvMF_0646: DvMF_0646 - formate dehydrogenase, alpha subunit (RefSeq), at 776,678 to 779,719
_0646
DvMF_0647: DvMF_0647 - formate dehydrogenase beta subunit (RefSeq), at 779,773 to 780,432
_0647
DvMF_0648: DvMF_0648 - formate dehydrogenase accessory protein (RefSeq), at 780,508 to 781,473
_0648
DvMF_0649: DvMF_0649 - cytochrome c class III (RefSeq), at 781,488 to 781,919
_0649
DvMF_0650: DvMF_0650 - putative transcriptional regulator, ModE family (RefSeq), at 782,404 to 782,814
_0650
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1
2 at 779.521 kb on + strand at 779.564 kb on + strand at 779.745 kb on - strand at 779.753 kb on - strand at 780.045 kb on - strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.168 kb on + strand, within DvMF_0647 at 780.176 kb on - strand, within DvMF_0647 at 780.707 kb on - strand, within DvMF_0648 at 780.750 kb on + strand, within DvMF_0648 at 780.872 kb on + strand, within DvMF_0648 at 781.099 kb on + strand, within DvMF_0648 at 781.122 kb on + strand, within DvMF_0648 at 781.197 kb on + strand, within DvMF_0648 at 781.349 kb on + strand, within DvMF_0648 at 781.393 kb on - strand at 781.393 kb on - strand at 781.472 kb on + strand at 781.588 kb on + strand, within DvMF_0649 at 781.841 kb on - strand, within DvMF_0649 at 782.303 kb on - strand at 782.336 kb on - strand at 782.336 kb on - strand at 782.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 8 day starvation, 30C remove 779,521 + +0.1 779,564 + +1.4 779,745 - +0.6 779,753 - +1.2 780,045 - DvMF_0647 0.41 +0.4 780,168 + DvMF_0647 0.60 +1.1 780,168 + DvMF_0647 0.60 +0.5 780,176 - DvMF_0647 0.61 +0.7 780,707 - DvMF_0648 0.21 +0.4 780,750 + DvMF_0648 0.25 -0.2 780,872 + DvMF_0648 0.38 +0.3 781,099 + DvMF_0648 0.61 -0.4 781,122 + DvMF_0648 0.64 +0.6 781,197 + DvMF_0648 0.71 +0.3 781,349 + DvMF_0648 0.87 +0.4 781,393 - +0.6 781,393 - +0.8 781,472 + -0.1 781,588 + DvMF_0649 0.23 +0.8 781,841 - DvMF_0649 0.82 -0.3 782,303 - +0.9 782,336 - +0.5 782,336 - +0.3 782,397 - +2.0
Or see this region's nucleotide sequence