Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0244

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnc and DvMF_0244 are separated by 100 nucleotidesDvMF_0244 and DvMF_0245 are separated by 302 nucleotides DvMF_0243: rnc - ribonuclease III (RefSeq), at 275,595 to 276,287 rnc DvMF_0244: DvMF_0244 - flagellin domain protein (RefSeq), at 276,388 to 277,284 _0244 DvMF_0245: DvMF_0245 - hypothetical protein (RefSeq), at 277,587 to 277,982 _0245 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1 2at 275.390 kb on - strandat 275.491 kb on + strandat 276.433 kb on - strandat 276.594 kb on - strand, within DvMF_0244at 276.639 kb on + strand, within DvMF_0244at 276.666 kb on - strand, within DvMF_0244at 276.758 kb on + strand, within DvMF_0244at 276.834 kb on + strand, within DvMF_0244at 277.187 kb on - strand, within DvMF_0244at 277.205 kb on - strandat 277.241 kb on - strandat 277.438 kb on + strandat 277.486 kb on + strandat 277.500 kb on - strandat 277.504 kb on + strandat 277.504 kb on + strandat 277.512 kb on - strandat 277.852 kb on + strand, within DvMF_0245at 277.937 kb on + strand, within DvMF_0245at 278.166 kb on + strandat 278.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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275,390 - +0.5
275,491 + +0.5
276,433 - +0.6
276,594 - DvMF_0244 0.23 +0.5
276,639 + DvMF_0244 0.28 +0.6
276,666 - DvMF_0244 0.31 +1.8
276,758 + DvMF_0244 0.41 -0.1
276,834 + DvMF_0244 0.50 +0.6
277,187 - DvMF_0244 0.89 +0.6
277,205 - +0.8
277,241 - +0.2
277,438 + +0.9
277,486 + +0.4
277,500 - +0.6
277,504 + +0.6
277,504 + -0.2
277,512 - -0.1
277,852 + DvMF_0245 0.67 +0.4
277,937 + DvMF_0245 0.88 +0.8
278,166 + +0.9
278,177 + +0.6

Or see this region's nucleotide sequence