Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0220

Experiment: 8 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0219 and DvMF_0220 are separated by 362 nucleotidesDvMF_0220 and DvMF_0221 are separated by 66 nucleotides DvMF_0219: DvMF_0219 - Peroxiredoxin (RefSeq), at 245,544 to 246,170 _0219 DvMF_0220: DvMF_0220 - hypothetical protein (RefSeq), at 246,533 to 247,135 _0220 DvMF_0221: DvMF_0221 - OmpA/MotB domain protein (RefSeq), at 247,202 to 248,239 _0221 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.654 kb on + strand, within DvMF_0219at 245.725 kb on + strand, within DvMF_0219at 245.728 kb on - strand, within DvMF_0219at 245.761 kb on + strand, within DvMF_0219at 245.983 kb on - strand, within DvMF_0219at 245.988 kb on + strand, within DvMF_0219at 246.015 kb on - strand, within DvMF_0219at 246.450 kb on - strandat 246.709 kb on + strand, within DvMF_0220at 246.873 kb on - strand, within DvMF_0220at 247.439 kb on - strand, within DvMF_0221at 248.075 kb on - strand, within DvMF_0221at 248.107 kb on + strand, within DvMF_0221

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Per-strain Table

Position Strand Gene LocusTag Fraction 8 day starvation, 30C
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245,654 + DvMF_0219 0.18 -0.1
245,725 + DvMF_0219 0.29 +0.4
245,728 - DvMF_0219 0.29 +0.6
245,761 + DvMF_0219 0.35 +0.4
245,983 - DvMF_0219 0.70 +0.5
245,988 + DvMF_0219 0.71 +0.4
246,015 - DvMF_0219 0.75 +0.7
246,450 - -0.2
246,709 + DvMF_0220 0.29 +0.3
246,873 - DvMF_0220 0.56 +0.7
247,439 - DvMF_0221 0.23 -0.1
248,075 - DvMF_0221 0.84 -2.9
248,107 + DvMF_0221 0.87 -2.1

Or see this region's nucleotide sequence