Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0117

Experiment: m.b. Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0116 and Dshi_0117 are separated by 851 nucleotidesDshi_0117 and Dshi_0118 are separated by 46 nucleotidesDshi_0118 and Dshi_0119 are separated by 48 nucleotides Dshi_0116: Dshi_0116 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 114,678 to 115,730 _0116 Dshi_0117: Dshi_0117 - methionine aminopeptidase, type I (RefSeq), at 116,582 to 117,397 _0117 Dshi_0118: Dshi_0118 - sugar fermentation stimulation protein (RefSeq), at 117,444 to 118,178 _0118 Dshi_0119: Dshi_0119 - molybdopterin binding domain (RefSeq), at 118,227 to 118,955 _0119 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.698 kb on + strandat 115.748 kb on - strandat 115.751 kb on + strandat 115.774 kb on - strandat 115.791 kb on - strandat 115.895 kb on + strandat 115.919 kb on - strandat 115.955 kb on - strandat 116.017 kb on + strandat 116.023 kb on + strandat 116.133 kb on + strandat 116.201 kb on + strandat 116.221 kb on + strandat 116.491 kb on + strandat 116.545 kb on + strandat 116.553 kb on - strandat 116.562 kb on + strandat 116.570 kb on - strandat 117.368 kb on + strandat 117.508 kb on - strandat 117.609 kb on - strand, within Dshi_0118at 117.615 kb on - strand, within Dshi_0118at 117.617 kb on - strand, within Dshi_0118at 117.721 kb on - strand, within Dshi_0118at 117.736 kb on + strand, within Dshi_0118at 117.744 kb on - strand, within Dshi_0118at 117.776 kb on + strand, within Dshi_0118at 117.867 kb on - strand, within Dshi_0118at 117.952 kb on + strand, within Dshi_0118at 117.956 kb on - strand, within Dshi_0118at 118.096 kb on - strand, within Dshi_0118at 118.101 kb on + strand, within Dshi_0118at 118.109 kb on - strandat 118.109 kb on - strandat 118.180 kb on + strandat 118.185 kb on + strandat 118.187 kb on + strandat 118.193 kb on - strandat 118.195 kb on - strandat 118.216 kb on - strandat 118.216 kb on - strandat 118.216 kb on - strandat 118.217 kb on + strandat 118.225 kb on - strandat 118.289 kb on + strandat 118.378 kb on - strand, within Dshi_0119

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.001 mM
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115,698 + +0.2
115,748 - +0.8
115,751 + -0.1
115,774 - -0.0
115,791 - -0.1
115,895 + -0.7
115,919 - -0.2
115,955 - +0.7
116,017 + -1.9
116,023 + -0.6
116,133 + -0.9
116,201 + -1.1
116,221 + -0.4
116,491 + -2.1
116,545 + -0.5
116,553 - +0.3
116,562 + -0.2
116,570 - -0.9
117,368 + -1.7
117,508 - +0.2
117,609 - Dshi_0118 0.22 -1.2
117,615 - Dshi_0118 0.23 -0.7
117,617 - Dshi_0118 0.24 +0.3
117,721 - Dshi_0118 0.38 +0.2
117,736 + Dshi_0118 0.40 -0.6
117,744 - Dshi_0118 0.41 -0.1
117,776 + Dshi_0118 0.45 -1.9
117,867 - Dshi_0118 0.58 -0.8
117,952 + Dshi_0118 0.69 +0.2
117,956 - Dshi_0118 0.70 -1.1
118,096 - Dshi_0118 0.89 -1.1
118,101 + Dshi_0118 0.89 -0.3
118,109 - +0.0
118,109 - +0.1
118,180 + +1.2
118,185 + +0.5
118,187 + +1.2
118,193 - +0.4
118,195 - -0.4
118,216 - +1.1
118,216 - -0.5
118,216 - +0.4
118,217 + -0.8
118,225 - -2.1
118,289 + +0.3
118,378 - Dshi_0119 0.21 -0.0

Or see this region's nucleotide sequence