Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09050

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09030 and PGA1_c09040 overlap by 4 nucleotidesPGA1_c09040 and PGA1_c09050 overlap by 25 nucleotidesPGA1_c09050 and PGA1_c09070 are separated by 23 nucleotidesPGA1_c09070 and PGA1_c09090 are separated by 3 nucleotidesPGA1_c09090 and PGA1_c09100 overlap by 32 nucleotides PGA1_c09030: PGA1_c09030 - phosphomethylpyrimidine kinase ThiD, at 931,201 to 931,998 _c09030 PGA1_c09040: PGA1_c09040 - putative adenylyltransferase ThiF, at 931,995 to 932,984 _c09040 PGA1_c09050: PGA1_c09050 - thiamine-phosphate pyrophosphorylase ThiE, at 932,960 to 933,553 _c09050 PGA1_c09070: PGA1_c09070 - thiazole biosynthesis protein ThiG, at 933,577 to 934,344 _c09070 PGA1_c09090: PGA1_c09090 - thiamine biosynthesis protein ThiS, at 934,348 to 934,545 _c09090 PGA1_c09100: PGA1_c09100 - putative thiamine biosynthesis oxidoreductase ThiO, at 934,514 to 935,488 _c09100 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.996 kb on + strandat 932.004 kb on - strandat 932.004 kb on - strandat 932.009 kb on - strandat 932.016 kb on + strandat 932.068 kb on - strandat 932.091 kb on + strandat 932.091 kb on + strandat 932.091 kb on + strandat 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.184 kb on - strand, within PGA1_c09040at 932.207 kb on - strand, within PGA1_c09040at 932.222 kb on - strand, within PGA1_c09040at 932.267 kb on + strand, within PGA1_c09040at 932.267 kb on + strand, within PGA1_c09040at 932.275 kb on - strand, within PGA1_c09040at 932.353 kb on - strand, within PGA1_c09040at 932.436 kb on + strand, within PGA1_c09040at 932.444 kb on - strand, within PGA1_c09040at 932.496 kb on + strand, within PGA1_c09040at 932.541 kb on - strand, within PGA1_c09040at 932.576 kb on + strand, within PGA1_c09040at 932.576 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.580 kb on + strand, within PGA1_c09040at 932.584 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.588 kb on + strand, within PGA1_c09040at 932.588 kb on + strand, within PGA1_c09040at 932.596 kb on - strand, within PGA1_c09040at 932.708 kb on + strand, within PGA1_c09040at 932.722 kb on + strand, within PGA1_c09040at 932.757 kb on + strand, within PGA1_c09040at 932.760 kb on - strand, within PGA1_c09040at 932.786 kb on - strand, within PGA1_c09040at 932.789 kb on + strand, within PGA1_c09040at 932.800 kb on + strand, within PGA1_c09040at 932.849 kb on + strand, within PGA1_c09040at 932.859 kb on + strand, within PGA1_c09040at 932.859 kb on + strand, within PGA1_c09040at 932.862 kb on - strand, within PGA1_c09040at 932.981 kb on - strandat 932.981 kb on - strandat 932.981 kb on - strandat 933.114 kb on + strand, within PGA1_c09050at 933.146 kb on + strand, within PGA1_c09050at 933.154 kb on - strand, within PGA1_c09050at 933.184 kb on - strand, within PGA1_c09050at 933.186 kb on + strand, within PGA1_c09050at 933.186 kb on + strand, within PGA1_c09050at 933.213 kb on - strand, within PGA1_c09050at 933.275 kb on + strand, within PGA1_c09050at 933.283 kb on - strand, within PGA1_c09050at 933.283 kb on - strand, within PGA1_c09050at 933.312 kb on - strand, within PGA1_c09050at 933.314 kb on + strand, within PGA1_c09050at 933.314 kb on + strand, within PGA1_c09050at 933.322 kb on - strand, within PGA1_c09050at 933.322 kb on - strand, within PGA1_c09050at 933.484 kb on + strand, within PGA1_c09050at 933.488 kb on + strand, within PGA1_c09050at 933.518 kb on + strandat 933.575 kb on + strandat 933.580 kb on + strandat 933.581 kb on - strandat 933.583 kb on - strandat 933.583 kb on - strandat 933.583 kb on - strandat 933.583 kb on - strandat 933.603 kb on - strandat 933.689 kb on + strand, within PGA1_c09070at 933.702 kb on - strand, within PGA1_c09070at 933.731 kb on + strand, within PGA1_c09070at 933.731 kb on + strand, within PGA1_c09070at 933.739 kb on - strand, within PGA1_c09070at 933.767 kb on + strand, within PGA1_c09070at 933.862 kb on + strand, within PGA1_c09070at 933.865 kb on - strand, within PGA1_c09070at 933.878 kb on + strand, within PGA1_c09070at 933.881 kb on - strand, within PGA1_c09070at 933.901 kb on - strand, within PGA1_c09070at 933.948 kb on + strand, within PGA1_c09070at 933.972 kb on + strand, within PGA1_c09070at 933.978 kb on - strand, within PGA1_c09070at 933.980 kb on - strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.004 kb on + strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.012 kb on - strand, within PGA1_c09070at 934.076 kb on + strand, within PGA1_c09070at 934.084 kb on - strand, within PGA1_c09070at 934.103 kb on - strand, within PGA1_c09070at 934.103 kb on - strand, within PGA1_c09070at 934.108 kb on + strand, within PGA1_c09070at 934.142 kb on + strand, within PGA1_c09070at 934.142 kb on + strand, within PGA1_c09070at 934.150 kb on - strand, within PGA1_c09070at 934.152 kb on + strand, within PGA1_c09070at 934.152 kb on + strand, within PGA1_c09070at 934.162 kb on + strand, within PGA1_c09070at 934.275 kb on + strandat 934.275 kb on - strandat 934.306 kb on - strandat 934.311 kb on + strandat 934.311 kb on + strandat 934.311 kb on + strandat 934.319 kb on - strandat 934.339 kb on - strandat 934.354 kb on - strandat 934.364 kb on + strandat 934.472 kb on - strand, within PGA1_c09090at 934.513 kb on - strand, within PGA1_c09090at 934.529 kb on - strandat 934.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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931,996 + +0.4
932,004 - -1.6
932,004 - -0.8
932,009 - -0.2
932,016 + -1.5
932,068 - +0.1
932,091 + -1.4
932,091 + -1.5
932,091 + +0.2
932,099 - PGA1_c09040 0.11 -0.5
932,099 - PGA1_c09040 0.11 -1.4
932,099 - PGA1_c09040 0.11 +0.9
932,099 - PGA1_c09040 0.11 +0.2
932,099 - PGA1_c09040 0.11 -1.7
932,184 - PGA1_c09040 0.19 -1.6
932,207 - PGA1_c09040 0.21 -1.6
932,222 - PGA1_c09040 0.23 -0.8
932,267 + PGA1_c09040 0.27 -1.0
932,267 + PGA1_c09040 0.27 -1.1
932,275 - PGA1_c09040 0.28 -1.0
932,353 - PGA1_c09040 0.36 -0.1
932,436 + PGA1_c09040 0.45 -1.2
932,444 - PGA1_c09040 0.45 +0.0
932,496 + PGA1_c09040 0.51 +0.4
932,541 - PGA1_c09040 0.55 -0.6
932,576 + PGA1_c09040 0.59 -1.8
932,576 + PGA1_c09040 0.59 -1.3
932,578 + PGA1_c09040 0.59 +0.6
932,578 + PGA1_c09040 0.59 +0.9
932,578 + PGA1_c09040 0.59 +0.2
932,578 + PGA1_c09040 0.59 +1.0
932,580 + PGA1_c09040 0.59 -2.0
932,584 - PGA1_c09040 0.59 -1.4
932,586 - PGA1_c09040 0.60 -0.9
932,586 - PGA1_c09040 0.60 -0.9
932,586 - PGA1_c09040 0.60 -2.2
932,588 + PGA1_c09040 0.60 -0.7
932,588 + PGA1_c09040 0.60 -0.3
932,596 - PGA1_c09040 0.61 +1.0
932,708 + PGA1_c09040 0.72 +1.2
932,722 + PGA1_c09040 0.73 -0.3
932,757 + PGA1_c09040 0.77 +0.1
932,760 - PGA1_c09040 0.77 -0.7
932,786 - PGA1_c09040 0.80 -1.5
932,789 + PGA1_c09040 0.80 -0.4
932,800 + PGA1_c09040 0.81 -3.2
932,849 + PGA1_c09040 0.86 -2.7
932,859 + PGA1_c09040 0.87 -0.9
932,859 + PGA1_c09040 0.87 -2.6
932,862 - PGA1_c09040 0.88 -0.1
932,981 - -0.7
932,981 - +0.2
932,981 - -0.1
933,114 + PGA1_c09050 0.26 -0.9
933,146 + PGA1_c09050 0.31 -2.3
933,154 - PGA1_c09050 0.33 +0.1
933,184 - PGA1_c09050 0.38 -0.2
933,186 + PGA1_c09050 0.38 -0.4
933,186 + PGA1_c09050 0.38 -0.8
933,213 - PGA1_c09050 0.43 -0.9
933,275 + PGA1_c09050 0.53 -1.6
933,283 - PGA1_c09050 0.54 -3.1
933,283 - PGA1_c09050 0.54 -1.4
933,312 - PGA1_c09050 0.59 -0.7
933,314 + PGA1_c09050 0.60 -0.6
933,314 + PGA1_c09050 0.60 -0.1
933,322 - PGA1_c09050 0.61 +1.9
933,322 - PGA1_c09050 0.61 -0.7
933,484 + PGA1_c09050 0.88 -0.7
933,488 + PGA1_c09050 0.89 -2.4
933,518 + -0.2
933,575 + +0.6
933,580 + -2.8
933,581 - -1.1
933,583 - -0.2
933,583 - -0.6
933,583 - -0.4
933,583 - -0.2
933,603 - -2.1
933,689 + PGA1_c09070 0.15 -1.1
933,702 - PGA1_c09070 0.16 -0.8
933,731 + PGA1_c09070 0.20 -1.9
933,731 + PGA1_c09070 0.20 -1.8
933,739 - PGA1_c09070 0.21 -1.0
933,767 + PGA1_c09070 0.25 -0.6
933,862 + PGA1_c09070 0.37 -2.2
933,865 - PGA1_c09070 0.38 -0.5
933,878 + PGA1_c09070 0.39 -1.4
933,881 - PGA1_c09070 0.40 -1.4
933,901 - PGA1_c09070 0.42 +0.2
933,948 + PGA1_c09070 0.48 +0.0
933,972 + PGA1_c09070 0.51 -0.4
933,978 - PGA1_c09070 0.52 -2.1
933,980 - PGA1_c09070 0.52 -0.4
934,004 + PGA1_c09070 0.56 -1.3
934,004 + PGA1_c09070 0.56 -0.4
934,004 + PGA1_c09070 0.56 -1.5
934,004 + PGA1_c09070 0.56 -0.4
934,004 + PGA1_c09070 0.56 -1.7
934,004 + PGA1_c09070 0.56 -0.9
934,004 + PGA1_c09070 0.56 -2.0
934,004 + PGA1_c09070 0.56 -1.1
934,012 - PGA1_c09070 0.57 +0.1
934,012 - PGA1_c09070 0.57 -0.8
934,012 - PGA1_c09070 0.57 -1.2
934,012 - PGA1_c09070 0.57 -1.4
934,012 - PGA1_c09070 0.57 -1.0
934,012 - PGA1_c09070 0.57 -1.2
934,012 - PGA1_c09070 0.57 -1.4
934,012 - PGA1_c09070 0.57 +0.6
934,012 - PGA1_c09070 0.57 +0.2
934,076 + PGA1_c09070 0.65 -2.1
934,084 - PGA1_c09070 0.66 -1.5
934,103 - PGA1_c09070 0.68 -2.2
934,103 - PGA1_c09070 0.68 -1.1
934,108 + PGA1_c09070 0.69 -0.9
934,142 + PGA1_c09070 0.74 -2.0
934,142 + PGA1_c09070 0.74 -0.7
934,150 - PGA1_c09070 0.75 -1.9
934,152 + PGA1_c09070 0.75 -0.4
934,152 + PGA1_c09070 0.75 -0.3
934,162 + PGA1_c09070 0.76 +0.1
934,275 + -1.0
934,275 - -1.0
934,306 - -1.6
934,311 + -0.7
934,311 + -2.2
934,311 + -0.5
934,319 - -1.0
934,339 - -0.7
934,354 - +0.6
934,364 + -1.6
934,472 - PGA1_c09090 0.63 -0.7
934,513 - PGA1_c09090 0.83 -1.0
934,529 - -0.6
934,539 + -1.0

Or see this region's nucleotide sequence