Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3910 and HP15_3911 are separated by 95 nucleotides HP15_3911 and HP15_3912 are separated by 47 nucleotides HP15_3912 and HP15_3913 overlap by 37 nucleotides
HP15_3910: HP15_3910 - metal dependent phosphohydrolase, at 4,139,101 to 4,140,225
_3910
HP15_3911: HP15_3911 - hypothetical protein, at 4,140,321 to 4,140,455
_3911
HP15_3912: HP15_3912 - diguanylate cyclase, at 4,140,503 to 4,141,513
_3912
HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898
_3913
Position (kb)
4140
4141
4142 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4139.517 kb on + strand, within HP15_3910 at 4139.526 kb on - strand, within HP15_3910 at 4139.648 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.683 kb on - strand, within HP15_3910 at 4139.838 kb on - strand, within HP15_3910 at 4139.843 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.880 kb on + strand, within HP15_3910 at 4139.893 kb on - strand, within HP15_3910 at 4139.977 kb on - strand, within HP15_3910 at 4139.988 kb on + strand, within HP15_3910 at 4139.991 kb on - strand, within HP15_3910 at 4140.138 kb on + strand at 4140.146 kb on - strand at 4140.164 kb on + strand at 4140.164 kb on + strand at 4140.172 kb on - strand at 4140.225 kb on + strand at 4140.225 kb on + strand at 4140.233 kb on - strand at 4140.243 kb on - strand at 4140.253 kb on - strand at 4140.299 kb on + strand at 4140.514 kb on + strand at 4140.558 kb on - strand at 4140.610 kb on - strand, within HP15_3912 at 4140.657 kb on + strand, within HP15_3912 at 4140.662 kb on + strand, within HP15_3912 at 4140.665 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.675 kb on - strand, within HP15_3912 at 4140.773 kb on - strand, within HP15_3912 at 4140.778 kb on - strand, within HP15_3912 at 4140.788 kb on - strand, within HP15_3912 at 4140.901 kb on - strand, within HP15_3912 at 4141.085 kb on + strand, within HP15_3912 at 4141.140 kb on - strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.313 kb on + strand, within HP15_3912 at 4141.373 kb on - strand, within HP15_3912 at 4141.435 kb on - strand at 4141.448 kb on + strand at 4141.475 kb on + strand at 4141.567 kb on + strand at 4141.567 kb on + strand at 4141.636 kb on + strand, within HP15_3913 at 4141.643 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.780 kb on + strand, within HP15_3913 at 4141.788 kb on - strand, within HP15_3913 at 4141.796 kb on + strand, within HP15_3913 at 4141.806 kb on + strand, within HP15_3913 at 4141.822 kb on + strand, within HP15_3913 at 4141.828 kb on - strand, within HP15_3913 at 4141.830 kb on - strand, within HP15_3913 at 4142.364 kb on - strand, within HP15_3913 at 4142.387 kb on - strand, within HP15_3913 at 4142.478 kb on - strand, within HP15_3913 at 4142.489 kb on + strand, within HP15_3913 at 4142.497 kb on - strand, within HP15_3913 at 4142.503 kb on - strand, within HP15_3913
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 4,139,517 + HP15_3910 0.37 +0.8 4,139,526 - HP15_3910 0.38 +0.2 4,139,648 + HP15_3910 0.49 +0.4 4,139,675 + HP15_3910 0.51 +0.3 4,139,675 + HP15_3910 0.51 +1.2 4,139,683 - HP15_3910 0.52 +0.6 4,139,838 - HP15_3910 0.66 +2.2 4,139,843 + HP15_3910 0.66 +0.2 4,139,865 + HP15_3910 0.68 -1.5 4,139,865 + HP15_3910 0.68 +1.2 4,139,880 + HP15_3910 0.69 -1.1 4,139,893 - HP15_3910 0.70 -2.4 4,139,977 - HP15_3910 0.78 -0.2 4,139,988 + HP15_3910 0.79 +0.3 4,139,991 - HP15_3910 0.79 -1.4 4,140,138 + -0.1 4,140,146 - -0.5 4,140,164 + -0.2 4,140,164 + +0.8 4,140,172 - -1.0 4,140,225 + +0.1 4,140,225 + +0.3 4,140,233 - +1.4 4,140,243 - +0.5 4,140,253 - -1.8 4,140,299 + +0.4 4,140,514 + -0.1 4,140,558 - +0.3 4,140,610 - HP15_3912 0.11 +1.3 4,140,657 + HP15_3912 0.15 -0.4 4,140,662 + HP15_3912 0.16 +0.5 4,140,665 - HP15_3912 0.16 +0.7 4,140,670 - HP15_3912 0.17 -0.2 4,140,670 - HP15_3912 0.17 -1.3 4,140,675 - HP15_3912 0.17 -0.4 4,140,773 - HP15_3912 0.27 -0.2 4,140,778 - HP15_3912 0.27 -0.1 4,140,788 - HP15_3912 0.28 +1.5 4,140,901 - HP15_3912 0.39 -0.4 4,141,085 + HP15_3912 0.58 -0.2 4,141,140 - HP15_3912 0.63 -0.4 4,141,212 + HP15_3912 0.70 -0.9 4,141,212 + HP15_3912 0.70 -0.5 4,141,220 - HP15_3912 0.71 +0.8 4,141,220 - HP15_3912 0.71 -0.1 4,141,313 + HP15_3912 0.80 -0.2 4,141,373 - HP15_3912 0.86 +1.2 4,141,435 - +0.5 4,141,448 + -0.2 4,141,475 + +0.3 4,141,567 + -0.7 4,141,567 + -0.1 4,141,636 + HP15_3913 0.11 -0.2 4,141,643 + HP15_3913 0.12 +0.1 4,141,648 + HP15_3913 0.12 +0.8 4,141,648 + HP15_3913 0.12 +0.4 4,141,649 - HP15_3913 0.12 -0.7 4,141,649 - HP15_3913 0.12 -0.3 4,141,780 + HP15_3913 0.21 +0.1 4,141,788 - HP15_3913 0.22 +0.2 4,141,796 + HP15_3913 0.22 +1.1 4,141,806 + HP15_3913 0.23 +0.2 4,141,822 + HP15_3913 0.24 -1.8 4,141,828 - HP15_3913 0.25 +0.1 4,141,830 - HP15_3913 0.25 -0.1 4,142,364 - HP15_3913 0.62 +0.6 4,142,387 - HP15_3913 0.64 +0.8 4,142,478 - HP15_3913 0.70 +0.6 4,142,489 + HP15_3913 0.71 -0.8 4,142,497 - HP15_3913 0.72 -0.1 4,142,503 - HP15_3913 0.72 +2.0
Or see this region's nucleotide sequence