Strain Fitness in Marinobacter adhaerens HP15 around HP15_2959

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2958 and HP15_2959 are separated by 30 nucleotidesHP15_2959 and HP15_2960 are separated by 110 nucleotides HP15_2958: HP15_2958 - extracellular solute-binding protein family 1, at 3,101,627 to 3,102,877 _2958 HP15_2959: HP15_2959 - porin, LamB type, at 3,102,908 to 3,104,356 _2959 HP15_2960: HP15_2960 - two-component sensor, at 3,104,467 to 3,105,933 _2960 Position (kb) 3102 3103 3104 3105Strain fitness (log2 ratio) -1 0 1 2 3at 3101.944 kb on - strand, within HP15_2958at 3101.976 kb on - strand, within HP15_2958at 3102.025 kb on - strand, within HP15_2958at 3102.025 kb on - strand, within HP15_2958at 3102.060 kb on + strand, within HP15_2958at 3102.060 kb on + strand, within HP15_2958at 3102.068 kb on - strand, within HP15_2958at 3102.075 kb on + strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.200 kb on - strand, within HP15_2958at 3102.207 kb on + strand, within HP15_2958at 3102.225 kb on - strand, within HP15_2958at 3102.326 kb on - strand, within HP15_2958at 3102.326 kb on - strand, within HP15_2958at 3102.345 kb on + strand, within HP15_2958at 3102.384 kb on + strand, within HP15_2958at 3102.384 kb on + strand, within HP15_2958at 3102.392 kb on - strand, within HP15_2958at 3102.402 kb on - strand, within HP15_2958at 3102.402 kb on - strand, within HP15_2958at 3102.464 kb on - strand, within HP15_2958at 3102.471 kb on + strand, within HP15_2958at 3102.608 kb on - strand, within HP15_2958at 3102.710 kb on + strand, within HP15_2958at 3102.776 kb on + strandat 3102.797 kb on + strandat 3102.875 kb on - strandat 3102.895 kb on + strandat 3103.173 kb on + strand, within HP15_2959at 3103.181 kb on - strand, within HP15_2959at 3103.200 kb on + strand, within HP15_2959at 3103.416 kb on - strand, within HP15_2959at 3103.431 kb on + strand, within HP15_2959at 3103.486 kb on - strand, within HP15_2959at 3103.787 kb on + strand, within HP15_2959at 3103.787 kb on + strand, within HP15_2959at 3103.795 kb on - strand, within HP15_2959at 3103.795 kb on - strand, within HP15_2959at 3103.810 kb on + strand, within HP15_2959at 3103.888 kb on + strand, within HP15_2959at 3103.889 kb on + strand, within HP15_2959at 3103.949 kb on - strand, within HP15_2959at 3104.082 kb on - strand, within HP15_2959at 3104.082 kb on - strand, within HP15_2959at 3104.082 kb on - strand, within HP15_2959at 3104.096 kb on - strand, within HP15_2959at 3104.160 kb on + strand, within HP15_2959at 3104.161 kb on - strand, within HP15_2959at 3104.196 kb on - strand, within HP15_2959at 3104.203 kb on + strand, within HP15_2959at 3104.231 kb on - strandat 3104.327 kb on - strandat 3104.509 kb on - strandat 3104.562 kb on - strandat 3104.653 kb on + strand, within HP15_2960at 3104.708 kb on - strand, within HP15_2960at 3104.751 kb on - strand, within HP15_2960at 3104.831 kb on - strand, within HP15_2960at 3104.929 kb on - strand, within HP15_2960at 3105.035 kb on + strand, within HP15_2960at 3105.118 kb on - strand, within HP15_2960at 3105.124 kb on + strand, within HP15_2960at 3105.351 kb on + strand, within HP15_2960

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,101,944 - HP15_2958 0.25 +0.6
3,101,976 - HP15_2958 0.28 +0.4
3,102,025 - HP15_2958 0.32 +0.2
3,102,025 - HP15_2958 0.32 -0.6
3,102,060 + HP15_2958 0.35 +1.2
3,102,060 + HP15_2958 0.35 +0.4
3,102,068 - HP15_2958 0.35 +0.4
3,102,075 + HP15_2958 0.36 -0.0
3,102,083 - HP15_2958 0.36 -1.0
3,102,083 - HP15_2958 0.36 -0.2
3,102,083 - HP15_2958 0.36 -1.2
3,102,200 - HP15_2958 0.46 +1.2
3,102,207 + HP15_2958 0.46 +0.1
3,102,225 - HP15_2958 0.48 -0.5
3,102,326 - HP15_2958 0.56 +0.4
3,102,326 - HP15_2958 0.56 -1.4
3,102,345 + HP15_2958 0.57 -0.4
3,102,384 + HP15_2958 0.61 +0.0
3,102,384 + HP15_2958 0.61 +0.0
3,102,392 - HP15_2958 0.61 +0.1
3,102,402 - HP15_2958 0.62 -0.4
3,102,402 - HP15_2958 0.62 +0.3
3,102,464 - HP15_2958 0.67 +0.2
3,102,471 + HP15_2958 0.67 -0.8
3,102,608 - HP15_2958 0.78 +0.5
3,102,710 + HP15_2958 0.87 +0.5
3,102,776 + -0.8
3,102,797 + -0.3
3,102,875 - -0.8
3,102,895 + +0.2
3,103,173 + HP15_2959 0.18 +0.1
3,103,181 - HP15_2959 0.19 -0.2
3,103,200 + HP15_2959 0.20 +3.0
3,103,416 - HP15_2959 0.35 +0.0
3,103,431 + HP15_2959 0.36 +0.2
3,103,486 - HP15_2959 0.40 +1.0
3,103,787 + HP15_2959 0.61 +0.1
3,103,787 + HP15_2959 0.61 +0.4
3,103,795 - HP15_2959 0.61 +0.8
3,103,795 - HP15_2959 0.61 +0.0
3,103,810 + HP15_2959 0.62 +0.7
3,103,888 + HP15_2959 0.68 -1.1
3,103,889 + HP15_2959 0.68 +0.2
3,103,949 - HP15_2959 0.72 +0.2
3,104,082 - HP15_2959 0.81 +1.0
3,104,082 - HP15_2959 0.81 +0.0
3,104,082 - HP15_2959 0.81 +1.2
3,104,096 - HP15_2959 0.82 -0.3
3,104,160 + HP15_2959 0.86 -0.2
3,104,161 - HP15_2959 0.86 +1.7
3,104,196 - HP15_2959 0.89 +1.0
3,104,203 + HP15_2959 0.89 -0.8
3,104,231 - -0.1
3,104,327 - +0.0
3,104,509 - +0.0
3,104,562 - +1.0
3,104,653 + HP15_2960 0.13 +0.6
3,104,708 - HP15_2960 0.16 -0.7
3,104,751 - HP15_2960 0.19 +0.4
3,104,831 - HP15_2960 0.25 -0.1
3,104,929 - HP15_2960 0.31 -1.1
3,105,035 + HP15_2960 0.39 +0.6
3,105,118 - HP15_2960 0.44 -0.4
3,105,124 + HP15_2960 0.45 +0.6
3,105,351 + HP15_2960 0.60 +0.1

Or see this region's nucleotide sequence