Strain Fitness in Marinobacter adhaerens HP15 around HP15_2408

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2407 and HP15_2408 are separated by 71 nucleotidesHP15_2408 and HP15_2409 are separated by 312 nucleotides HP15_2407: HP15_2407 - O-antigen ligase-like protein, at 2,541,332 to 2,542,786 _2407 HP15_2408: HP15_2408 - methylation site containing protein, at 2,542,858 to 2,543,268 _2408 HP15_2409: HP15_2409 - ATPase, type IV, pilus assembly, PilB, at 2,543,581 to 2,545,296 _2409 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1 2at 2541.948 kb on + strand, within HP15_2407at 2541.955 kb on - strand, within HP15_2407at 2541.978 kb on - strand, within HP15_2407at 2541.978 kb on - strand, within HP15_2407at 2542.048 kb on + strand, within HP15_2407at 2542.133 kb on - strand, within HP15_2407at 2542.186 kb on + strand, within HP15_2407at 2542.329 kb on + strand, within HP15_2407at 2542.329 kb on + strand, within HP15_2407at 2542.329 kb on + strand, within HP15_2407at 2542.329 kb on + strand, within HP15_2407at 2542.329 kb on + strand, within HP15_2407at 2542.337 kb on - strand, within HP15_2407at 2542.337 kb on - strand, within HP15_2407at 2542.337 kb on - strand, within HP15_2407at 2542.337 kb on - strand, within HP15_2407at 2542.362 kb on + strand, within HP15_2407at 2542.362 kb on + strand, within HP15_2407at 2542.370 kb on - strand, within HP15_2407at 2542.434 kb on + strand, within HP15_2407at 2542.434 kb on - strand, within HP15_2407at 2542.474 kb on - strand, within HP15_2407at 2542.551 kb on + strand, within HP15_2407at 2542.593 kb on + strand, within HP15_2407at 2542.593 kb on + strand, within HP15_2407at 2542.699 kb on + strandat 2542.704 kb on + strandat 2542.720 kb on - strandat 2542.735 kb on - strandat 2542.771 kb on + strandat 2542.771 kb on + strandat 2542.777 kb on - strandat 2542.779 kb on - strandat 2542.900 kb on + strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2543.035 kb on + strand, within HP15_2408at 2543.109 kb on - strand, within HP15_2408at 2543.303 kb on + strandat 2543.485 kb on - strandat 2543.512 kb on + strandat 2543.565 kb on + strandat 2543.608 kb on - strandat 2543.608 kb on - strandat 2543.652 kb on - strandat 2543.864 kb on - strand, within HP15_2409at 2543.877 kb on - strand, within HP15_2409at 2543.938 kb on - strand, within HP15_2409at 2543.995 kb on - strand, within HP15_2409at 2543.995 kb on - strand, within HP15_2409at 2544.063 kb on + strand, within HP15_2409at 2544.071 kb on + strand, within HP15_2409at 2544.071 kb on - strand, within HP15_2409at 2544.120 kb on - strand, within HP15_2409at 2544.150 kb on - strand, within HP15_2409

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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2,541,948 + HP15_2407 0.42 -0.1
2,541,955 - HP15_2407 0.43 -0.7
2,541,978 - HP15_2407 0.44 +0.2
2,541,978 - HP15_2407 0.44 -1.1
2,542,048 + HP15_2407 0.49 +0.2
2,542,133 - HP15_2407 0.55 +0.4
2,542,186 + HP15_2407 0.59 +2.5
2,542,329 + HP15_2407 0.69 -0.8
2,542,329 + HP15_2407 0.69 +0.5
2,542,329 + HP15_2407 0.69 -0.3
2,542,329 + HP15_2407 0.69 -0.8
2,542,329 + HP15_2407 0.69 +0.5
2,542,337 - HP15_2407 0.69 -0.7
2,542,337 - HP15_2407 0.69 -0.6
2,542,337 - HP15_2407 0.69 -0.1
2,542,337 - HP15_2407 0.69 +0.3
2,542,362 + HP15_2407 0.71 -0.1
2,542,362 + HP15_2407 0.71 +0.0
2,542,370 - HP15_2407 0.71 +1.0
2,542,434 + HP15_2407 0.76 +0.1
2,542,434 - HP15_2407 0.76 -0.1
2,542,474 - HP15_2407 0.78 -0.5
2,542,551 + HP15_2407 0.84 -0.0
2,542,593 + HP15_2407 0.87 -0.4
2,542,593 + HP15_2407 0.87 -0.7
2,542,699 + -0.4
2,542,704 + +0.4
2,542,720 - +0.5
2,542,735 - -0.4
2,542,771 + +0.2
2,542,771 + -0.6
2,542,777 - +0.2
2,542,779 - +0.4
2,542,900 + HP15_2408 0.10 -1.7
2,542,996 - HP15_2408 0.34 -0.6
2,542,996 - HP15_2408 0.34 -1.1
2,542,996 - HP15_2408 0.34 -0.8
2,543,035 + HP15_2408 0.43 -1.3
2,543,109 - HP15_2408 0.61 +0.9
2,543,303 + +0.6
2,543,485 - +0.8
2,543,512 + -0.1
2,543,565 + +0.6
2,543,608 - -0.1
2,543,608 - -0.7
2,543,652 - -0.9
2,543,864 - HP15_2409 0.16 -0.4
2,543,877 - HP15_2409 0.17 -1.7
2,543,938 - HP15_2409 0.21 +0.7
2,543,995 - HP15_2409 0.24 +0.2
2,543,995 - HP15_2409 0.24 -0.1
2,544,063 + HP15_2409 0.28 -0.1
2,544,071 + HP15_2409 0.29 +0.0
2,544,071 - HP15_2409 0.29 -0.1
2,544,120 - HP15_2409 0.31 -0.3
2,544,150 - HP15_2409 0.33 -2.1

Or see this region's nucleotide sequence