Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2352 and HP15_2353 are separated by 22 nucleotides HP15_2353 and HP15_2354 are separated by 11 nucleotides HP15_2354 and HP15_2355 are separated by 4 nucleotides
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
HP15_2353: HP15_2353 - LemA family protein, at 2,477,570 to 2,478,157
_2353
HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166
_2354
HP15_2355: HP15_2355 - type II and III secretion system protein, at 2,480,171 to 2,482,162
_2355
Position (kb)
2478
2479
2480
2481 Strain fitness (log2 ratio)
-1
0
1
2 at 2477.248 kb on + strand, within HP15_2352 at 2477.371 kb on + strand at 2477.380 kb on - strand at 2477.380 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.638 kb on - strand, within HP15_2353 at 2477.769 kb on + strand, within HP15_2353 at 2477.866 kb on - strand, within HP15_2353 at 2477.962 kb on + strand, within HP15_2353 at 2478.010 kb on + strand, within HP15_2353 at 2478.033 kb on + strand, within HP15_2353 at 2478.207 kb on - strand at 2478.210 kb on + strand at 2478.215 kb on + strand at 2478.322 kb on - strand at 2478.415 kb on - strand, within HP15_2354 at 2479.008 kb on + strand, within HP15_2354 at 2479.118 kb on + strand, within HP15_2354 at 2479.128 kb on + strand, within HP15_2354 at 2479.151 kb on - strand, within HP15_2354 at 2479.178 kb on - strand, within HP15_2354 at 2479.178 kb on - strand, within HP15_2354 at 2479.182 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.237 kb on - strand, within HP15_2354 at 2479.385 kb on - strand, within HP15_2354 at 2479.456 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.467 kb on + strand, within HP15_2354 at 2479.498 kb on - strand, within HP15_2354 at 2479.543 kb on - strand, within HP15_2354 at 2479.569 kb on - strand, within HP15_2354 at 2479.639 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.655 kb on + strand, within HP15_2354 at 2479.840 kb on + strand, within HP15_2354 at 2479.858 kb on + strand, within HP15_2354 at 2479.955 kb on + strand, within HP15_2354 at 2480.010 kb on - strand at 2480.021 kb on + strand at 2480.021 kb on + strand at 2480.050 kb on + strand at 2480.057 kb on + strand at 2480.250 kb on + strand at 2480.626 kb on + strand, within HP15_2355 at 2480.634 kb on - strand, within HP15_2355 at 2480.710 kb on + strand, within HP15_2355 at 2480.713 kb on - strand, within HP15_2355 at 2480.732 kb on - strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.767 kb on + strand, within HP15_2355 at 2480.808 kb on + strand, within HP15_2355 at 2480.866 kb on - strand, within HP15_2355 at 2481.021 kb on + strand, within HP15_2355
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 2,477,248 + HP15_2352 0.85 -0.2 2,477,371 + +0.5 2,477,380 - +0.3 2,477,380 - -0.8 2,477,564 - +0.0 2,477,564 - +1.3 2,477,564 - +0.5 2,477,638 - HP15_2353 0.12 +0.7 2,477,769 + HP15_2353 0.34 +1.5 2,477,866 - HP15_2353 0.50 +0.5 2,477,962 + HP15_2353 0.67 +2.2 2,478,010 + HP15_2353 0.75 +0.9 2,478,033 + HP15_2353 0.79 +1.4 2,478,207 - -1.3 2,478,210 + +0.4 2,478,215 + +0.7 2,478,322 - +0.4 2,478,415 - HP15_2354 0.12 +0.3 2,479,008 + HP15_2354 0.42 +1.1 2,479,118 + HP15_2354 0.47 -1.0 2,479,128 + HP15_2354 0.48 -0.9 2,479,151 - HP15_2354 0.49 +0.2 2,479,178 - HP15_2354 0.51 -0.1 2,479,178 - HP15_2354 0.51 +1.1 2,479,182 - HP15_2354 0.51 +0.5 2,479,237 - HP15_2354 0.53 -0.4 2,479,237 - HP15_2354 0.53 +0.4 2,479,385 - HP15_2354 0.61 +0.5 2,479,456 + HP15_2354 0.64 -1.0 2,479,467 + HP15_2354 0.65 -0.1 2,479,467 + HP15_2354 0.65 +0.7 2,479,498 - HP15_2354 0.67 +0.3 2,479,543 - HP15_2354 0.69 -1.2 2,479,569 - HP15_2354 0.70 +1.5 2,479,639 + HP15_2354 0.74 -0.3 2,479,655 + HP15_2354 0.74 -0.5 2,479,655 + HP15_2354 0.74 +0.4 2,479,840 + HP15_2354 0.84 -1.6 2,479,858 + HP15_2354 0.85 +0.5 2,479,955 + HP15_2354 0.89 +0.6 2,480,010 - -0.5 2,480,021 + +1.1 2,480,021 + +0.5 2,480,050 + +1.3 2,480,057 + -1.1 2,480,250 + -0.1 2,480,626 + HP15_2355 0.23 +1.9 2,480,634 - HP15_2355 0.23 -0.1 2,480,710 + HP15_2355 0.27 -0.8 2,480,713 - HP15_2355 0.27 -0.5 2,480,732 - HP15_2355 0.28 -0.7 2,480,767 + HP15_2355 0.30 -0.5 2,480,767 + HP15_2355 0.30 -0.1 2,480,808 + HP15_2355 0.32 -0.0 2,480,866 - HP15_2355 0.35 +0.3 2,481,021 + HP15_2355 0.43 -1.3
Or see this region's nucleotide sequence