Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2194 and HP15_2195 overlap by 4 nucleotides HP15_2195 and HP15_2196 are separated by 90 nucleotides
HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061
_2194
HP15_2195: HP15_2195 - amino acid ABC transporter, permease protein, at 2,312,058 to 2,313,245
_2195
HP15_2196: HP15_2196 - glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein, at 2,313,336 to 2,314,379
_2196
Position (kb)
2312
2313
2314 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2311.117 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.132 kb on - strand, within HP15_2194 at 2311.177 kb on - strand, within HP15_2194 at 2311.261 kb on + strand, within HP15_2194 at 2311.356 kb on + strand, within HP15_2194 at 2311.358 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.593 kb on + strand, within HP15_2194 at 2311.615 kb on + strand, within HP15_2194 at 2311.703 kb on - strand, within HP15_2194 at 2311.737 kb on - strand, within HP15_2194 at 2311.857 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.948 kb on + strand, within HP15_2194 at 2311.957 kb on - strand at 2311.979 kb on - strand at 2312.066 kb on - strand at 2312.298 kb on + strand, within HP15_2195 at 2312.333 kb on - strand, within HP15_2195 at 2312.343 kb on + strand, within HP15_2195 at 2312.351 kb on - strand, within HP15_2195 at 2312.358 kb on - strand, within HP15_2195 at 2312.366 kb on - strand, within HP15_2195 at 2312.446 kb on - strand, within HP15_2195 at 2312.453 kb on - strand, within HP15_2195 at 2312.857 kb on + strand, within HP15_2195 at 2312.973 kb on + strand, within HP15_2195 at 2313.144 kb on - strand at 2313.144 kb on - strand at 2313.202 kb on + strand at 2313.210 kb on - strand at 2313.210 kb on - strand at 2313.269 kb on + strand at 2313.335 kb on - strand at 2313.381 kb on - strand at 2313.508 kb on + strand, within HP15_2196 at 2313.583 kb on - strand, within HP15_2196 at 2313.604 kb on + strand, within HP15_2196 at 2313.604 kb on - strand, within HP15_2196 at 2313.702 kb on + strand, within HP15_2196 at 2313.779 kb on - strand, within HP15_2196 at 2313.801 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.823 kb on - strand, within HP15_2196 at 2313.932 kb on + strand, within HP15_2196 at 2313.980 kb on - strand, within HP15_2196 at 2314.029 kb on + strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 2,311,117 - HP15_2194 0.13 +0.2 2,311,122 - HP15_2194 0.14 +0.4 2,311,122 - HP15_2194 0.14 +0.8 2,311,124 + HP15_2194 0.14 +0.2 2,311,124 + HP15_2194 0.14 -0.4 2,311,132 - HP15_2194 0.15 -0.4 2,311,177 - HP15_2194 0.19 -0.1 2,311,261 + HP15_2194 0.26 +0.5 2,311,356 + HP15_2194 0.35 -1.5 2,311,358 - HP15_2194 0.35 +0.5 2,311,364 - HP15_2194 0.36 +0.7 2,311,364 - HP15_2194 0.36 +0.8 2,311,364 - HP15_2194 0.36 +0.6 2,311,364 - HP15_2194 0.36 -0.2 2,311,364 - HP15_2194 0.36 -0.1 2,311,593 + HP15_2194 0.57 -0.2 2,311,615 + HP15_2194 0.59 -1.8 2,311,703 - HP15_2194 0.67 +1.0 2,311,737 - HP15_2194 0.70 +0.8 2,311,857 + HP15_2194 0.81 -0.6 2,311,923 + HP15_2194 0.87 +1.1 2,311,923 + HP15_2194 0.87 -0.0 2,311,923 + HP15_2194 0.87 +2.0 2,311,931 - HP15_2194 0.88 +0.5 2,311,931 - HP15_2194 0.88 -0.6 2,311,931 - HP15_2194 0.88 -0.5 2,311,948 + HP15_2194 0.90 +0.1 2,311,957 - +0.2 2,311,979 - +0.3 2,312,066 - +0.9 2,312,298 + HP15_2195 0.20 +0.4 2,312,333 - HP15_2195 0.23 +0.5 2,312,343 + HP15_2195 0.24 +1.1 2,312,351 - HP15_2195 0.25 +0.4 2,312,358 - HP15_2195 0.25 +0.6 2,312,366 - HP15_2195 0.26 -0.9 2,312,446 - HP15_2195 0.33 +0.1 2,312,453 - HP15_2195 0.33 +0.2 2,312,857 + HP15_2195 0.67 +0.7 2,312,973 + HP15_2195 0.77 -0.8 2,313,144 - +0.1 2,313,144 - -0.7 2,313,202 + -0.1 2,313,210 - +0.2 2,313,210 - +0.5 2,313,269 + -0.9 2,313,335 - +0.4 2,313,381 - +0.2 2,313,508 + HP15_2196 0.16 -0.2 2,313,583 - HP15_2196 0.24 +0.1 2,313,604 + HP15_2196 0.26 -1.3 2,313,604 - HP15_2196 0.26 -0.9 2,313,702 + HP15_2196 0.35 +0.1 2,313,779 - HP15_2196 0.42 -0.1 2,313,801 + HP15_2196 0.45 +0.1 2,313,803 + HP15_2196 0.45 -1.7 2,313,803 + HP15_2196 0.45 +0.4 2,313,823 - HP15_2196 0.47 +0.5 2,313,932 + HP15_2196 0.57 +0.5 2,313,980 - HP15_2196 0.62 +0.2 2,314,029 + HP15_2196 0.66 -0.4 2,314,105 - HP15_2196 0.74 -0.3 2,314,105 - HP15_2196 0.74 +0.6
Or see this region's nucleotide sequence