Strain Fitness in Marinobacter adhaerens HP15 around HP15_1480

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1479 and HP15_1480 are separated by 29 nucleotidesHP15_1480 and HP15_1481 are separated by 95 nucleotides HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326 _1479 HP15_1480: HP15_1480 - preprotein translocase, YajC subunit, at 1,556,356 to 1,556,718 _1480 HP15_1481: HP15_1481 - preprotein translocase subunit SecD, at 1,556,814 to 1,558,688 _1481 Position (kb) 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1at 1555.385 kb on - strand, within HP15_1479at 1555.385 kb on - strand, within HP15_1479at 1555.401 kb on + strand, within HP15_1479at 1555.409 kb on - strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.455 kb on + strand, within HP15_1479at 1555.460 kb on + strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.463 kb on - strand, within HP15_1479at 1555.931 kb on + strand, within HP15_1479at 1556.000 kb on - strand, within HP15_1479at 1556.071 kb on - strand, within HP15_1479at 1556.278 kb on + strandat 1556.278 kb on + strandat 1556.556 kb on + strand, within HP15_1480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
remove
1,555,385 - HP15_1479 0.16 -1.5
1,555,385 - HP15_1479 0.16 -2.4
1,555,401 + HP15_1479 0.17 -1.3
1,555,409 - HP15_1479 0.18 -1.3
1,555,455 + HP15_1479 0.22 -1.6
1,555,455 + HP15_1479 0.22 -1.3
1,555,455 + HP15_1479 0.22 -2.6
1,555,460 + HP15_1479 0.23 +0.7
1,555,463 - HP15_1479 0.23 +0.7
1,555,463 - HP15_1479 0.23 -0.8
1,555,463 - HP15_1479 0.23 -1.0
1,555,463 - HP15_1479 0.23 -1.8
1,555,931 + HP15_1479 0.65 -1.8
1,556,000 - HP15_1479 0.71 -1.6
1,556,071 - HP15_1479 0.77 -3.4
1,556,278 + -0.0
1,556,278 + +0.1
1,556,556 + HP15_1480 0.55 -1.8

Or see this region's nucleotide sequence