Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2814 and Dsui_2815 are separated by 256 nucleotides Dsui_2815 and Dsui_2816 are separated by 110 nucleotides Dsui_2816 and Dsui_2817 are separated by 184 nucleotides
Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563
_2814
Dsui_2815: Dsui_2815 - putative flavoprotein, at 2,990,820 to 2,991,386
_2815
Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719
_2816
Dsui_2817: Dsui_2817 - DMT(drug/metabolite transporter) superfamily permease, at 2,993,904 to 2,994,830
_2817
Position (kb)
2991
2992
2993
2994 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2990.512 kb on + strand at 2990.697 kb on + strand at 2990.747 kb on + strand at 2990.747 kb on + strand at 2990.755 kb on - strand at 2990.755 kb on - strand at 2990.798 kb on - strand at 2990.853 kb on - strand at 2990.871 kb on - strand at 2990.916 kb on + strand, within Dsui_2815 at 2991.015 kb on + strand, within Dsui_2815 at 2991.118 kb on + strand, within Dsui_2815 at 2991.219 kb on + strand, within Dsui_2815 at 2991.227 kb on - strand, within Dsui_2815 at 2991.262 kb on - strand, within Dsui_2815 at 2991.296 kb on + strand, within Dsui_2815 at 2991.363 kb on + strand at 2991.388 kb on - strand at 2991.468 kb on - strand at 2991.570 kb on - strand at 2991.804 kb on - strand, within Dsui_2816 at 2991.836 kb on - strand, within Dsui_2816 at 2992.278 kb on - strand, within Dsui_2816 at 2992.349 kb on - strand, within Dsui_2816 at 2992.458 kb on - strand, within Dsui_2816 at 2992.524 kb on - strand, within Dsui_2816 at 2992.701 kb on - strand, within Dsui_2816 at 2992.825 kb on - strand, within Dsui_2816 at 2992.882 kb on - strand, within Dsui_2816 at 2992.882 kb on - strand, within Dsui_2816 at 2993.021 kb on - strand, within Dsui_2816 at 2993.573 kb on - strand at 2993.687 kb on - strand at 2993.702 kb on - strand at 2993.876 kb on + strand at 2993.876 kb on + strand at 2993.901 kb on + strand at 2993.929 kb on - strand at 2993.982 kb on + strand at 2994.072 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.183 kb on + strand, within Dsui_2817 at 2994.185 kb on + strand, within Dsui_2817 at 2994.193 kb on - strand, within Dsui_2817 at 2994.315 kb on - strand at 2994.358 kb on + strand, within Dsui_2817 at 2994.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,990,512 + -1.0 2,990,697 + -2.0 2,990,747 + -0.8 2,990,747 + +0.8 2,990,755 - -0.2 2,990,755 - +0.8 2,990,798 - +0.8 2,990,853 - -1.2 2,990,871 - -0.8 2,990,916 + Dsui_2815 0.17 -1.5 2,991,015 + Dsui_2815 0.34 -0.8 2,991,118 + Dsui_2815 0.53 -0.9 2,991,219 + Dsui_2815 0.70 -0.3 2,991,227 - Dsui_2815 0.72 +0.8 2,991,262 - Dsui_2815 0.78 -0.8 2,991,296 + Dsui_2815 0.84 -1.2 2,991,363 + +0.8 2,991,388 - -2.0 2,991,468 - -0.1 2,991,570 - -3.4 2,991,804 - Dsui_2816 0.14 -2.0 2,991,836 - Dsui_2816 0.15 -3.3 2,992,278 - Dsui_2816 0.35 -3.8 2,992,349 - Dsui_2816 0.38 -3.4 2,992,458 - Dsui_2816 0.43 -5.7 2,992,524 - Dsui_2816 0.46 -6.2 2,992,701 - Dsui_2816 0.54 -3.2 2,992,825 - Dsui_2816 0.60 -2.3 2,992,882 - Dsui_2816 0.62 -2.8 2,992,882 - Dsui_2816 0.62 -3.0 2,993,021 - Dsui_2816 0.69 -2.0 2,993,573 - -3.0 2,993,687 - -3.4 2,993,702 - -0.8 2,993,876 + -0.2 2,993,876 + +0.8 2,993,901 + +0.8 2,993,929 - +0.8 2,993,982 + -3.2 2,994,072 + Dsui_2817 0.18 -0.8 2,994,180 + Dsui_2817 0.30 -0.2 2,994,180 + Dsui_2817 0.30 -1.5 2,994,183 + Dsui_2817 0.30 +0.8 2,994,185 + Dsui_2817 0.30 +0.2 2,994,193 - Dsui_2817 0.31 -0.8 2,994,315 - -0.2 2,994,358 + Dsui_2817 0.49 -1.5 2,994,413 - +0.8
Or see this region's nucleotide sequence