Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2237 and Dsui_2238 are separated by 47 nucleotides Dsui_2238 and Dsui_2239 are separated by 459 nucleotides
Dsui_2237: Dsui_2237 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,380,161 to 2,381,129
_2237
Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739
_2238
Dsui_2239: Dsui_2239 - tRNA (uracil-5-)-methyltransferase, at 2,383,199 to 2,384,287
_2239
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2380.192 kb on + strand at 2380.198 kb on + strand at 2380.206 kb on - strand at 2380.316 kb on + strand, within Dsui_2237 at 2380.334 kb on - strand, within Dsui_2237 at 2380.421 kb on - strand, within Dsui_2237 at 2380.441 kb on - strand, within Dsui_2237 at 2380.479 kb on + strand at 2380.493 kb on - strand, within Dsui_2237 at 2380.520 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.552 kb on - strand at 2380.677 kb on - strand, within Dsui_2237 at 2380.724 kb on + strand at 2380.810 kb on + strand at 2380.835 kb on + strand, within Dsui_2237 at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.854 kb on - strand, within Dsui_2237 at 2380.944 kb on - strand, within Dsui_2237 at 2380.962 kb on + strand at 2381.156 kb on - strand at 2381.191 kb on - strand at 2381.301 kb on + strand at 2381.309 kb on - strand at 2381.408 kb on + strand, within Dsui_2238 at 2381.461 kb on + strand at 2381.487 kb on + strand at 2381.545 kb on + strand, within Dsui_2238 at 2381.564 kb on + strand at 2381.564 kb on + strand at 2381.643 kb on - strand, within Dsui_2238 at 2381.664 kb on - strand at 2381.665 kb on + strand at 2381.782 kb on + strand at 2381.937 kb on + strand at 2382.002 kb on + strand at 2382.327 kb on + strand, within Dsui_2238 at 2382.382 kb on + strand at 2382.412 kb on + strand, within Dsui_2238 at 2382.527 kb on - strand at 2382.531 kb on - strand, within Dsui_2238 at 2382.562 kb on + strand at 2382.782 kb on - strand at 2382.936 kb on + strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.157 kb on - strand at 2383.221 kb on - strand at 2383.350 kb on - strand, within Dsui_2239 at 2383.356 kb on - strand, within Dsui_2239 at 2383.373 kb on - strand, within Dsui_2239 at 2383.475 kb on + strand at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.515 kb on + strand at 2383.523 kb on - strand, within Dsui_2239
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,380,192 + -0.1 2,380,198 + -0.1 2,380,206 - +0.9 2,380,316 + Dsui_2237 0.16 -0.7 2,380,334 - Dsui_2237 0.18 +0.9 2,380,421 - Dsui_2237 0.27 -0.1 2,380,441 - Dsui_2237 0.29 -1.4 2,380,479 + -0.1 2,380,493 - Dsui_2237 0.34 +0.9 2,380,520 - Dsui_2237 0.37 -2.3 2,380,542 - Dsui_2237 0.39 -2.9 2,380,542 - Dsui_2237 0.39 -0.7 2,380,542 - Dsui_2237 0.39 -1.1 2,380,552 - +0.9 2,380,677 - Dsui_2237 0.53 -1.7 2,380,724 + +0.9 2,380,810 + +0.9 2,380,835 + Dsui_2237 0.70 -0.7 2,380,835 + +0.9 2,380,835 + +0.9 2,380,835 + +0.9 2,380,854 - Dsui_2237 0.72 -0.7 2,380,944 - Dsui_2237 0.81 -1.7 2,380,962 + +0.9 2,381,156 - -0.1 2,381,191 - -0.5 2,381,301 + +0.9 2,381,309 - -1.4 2,381,408 + Dsui_2238 0.15 -1.7 2,381,461 + +0.9 2,381,487 + +0.9 2,381,545 + Dsui_2238 0.24 -1.1 2,381,564 + +0.9 2,381,564 + +0.9 2,381,643 - Dsui_2238 0.30 -0.5 2,381,664 - +0.9 2,381,665 + +0.9 2,381,782 + -0.1 2,381,937 + -0.7 2,382,002 + -0.1 2,382,327 + Dsui_2238 0.74 -1.1 2,382,382 + +0.9 2,382,412 + Dsui_2238 0.79 -1.1 2,382,527 - +0.9 2,382,531 - Dsui_2238 0.87 -0.7 2,382,562 + +0.9 2,382,782 - +0.9 2,382,936 + +0.9 2,383,038 - -1.4 2,383,038 - -1.4 2,383,038 - +0.9 2,383,157 - -0.3 2,383,221 - -0.2 2,383,350 - Dsui_2239 0.14 -0.7 2,383,356 - Dsui_2239 0.14 +0.3 2,383,373 - Dsui_2239 0.16 -0.4 2,383,475 + -1.1 2,383,483 - Dsui_2239 0.26 +0.2 2,383,483 - Dsui_2239 0.26 -0.2 2,383,483 - Dsui_2239 0.26 -1.5 2,383,515 + +0.9 2,383,523 - Dsui_2239 0.30 -1.1
Or see this region's nucleotide sequence