Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1564 and Dsui_1565 are separated by 180 nucleotides Dsui_1565 and Dsui_1566 are separated by 20 nucleotides Dsui_1566 and Dsui_1567 are separated by 14 nucleotides
Dsui_1564: Dsui_1564 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,632,669 to 1,636,514
_1564
Dsui_1565: Dsui_1565 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,636,695 to 1,639,238
_1565
Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071
_1566
Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646
_1567
Position (kb)
1636
1637
1638
1639
1640 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1635.797 kb on - strand, within Dsui_1564 at 1635.851 kb on + strand, within Dsui_1564 at 1635.881 kb on + strand, within Dsui_1564 at 1635.919 kb on + strand, within Dsui_1564 at 1635.926 kb on - strand, within Dsui_1564 at 1635.927 kb on - strand, within Dsui_1564 at 1635.936 kb on - strand, within Dsui_1564 at 1636.060 kb on + strand, within Dsui_1564 at 1636.082 kb on + strand, within Dsui_1564 at 1636.087 kb on + strand, within Dsui_1564 at 1636.097 kb on + strand, within Dsui_1564 at 1636.105 kb on - strand, within Dsui_1564 at 1636.105 kb on - strand, within Dsui_1564 at 1636.125 kb on + strand, within Dsui_1564 at 1636.144 kb on + strand at 1636.272 kb on - strand at 1636.431 kb on - strand at 1636.439 kb on + strand at 1636.439 kb on + strand at 1636.447 kb on - strand at 1636.524 kb on - strand at 1636.669 kb on + strand at 1636.723 kb on + strand at 1636.723 kb on + strand at 1636.731 kb on - strand at 1636.731 kb on - strand at 1636.862 kb on + strand at 1636.975 kb on - strand, within Dsui_1565 at 1637.133 kb on - strand at 1637.195 kb on - strand, within Dsui_1565 at 1637.340 kb on + strand, within Dsui_1565 at 1637.358 kb on - strand, within Dsui_1565 at 1637.358 kb on - strand, within Dsui_1565 at 1637.358 kb on - strand, within Dsui_1565 at 1637.429 kb on + strand, within Dsui_1565 at 1637.507 kb on - strand, within Dsui_1565 at 1637.597 kb on + strand, within Dsui_1565 at 1637.939 kb on + strand, within Dsui_1565 at 1638.106 kb on + strand, within Dsui_1565 at 1638.114 kb on - strand, within Dsui_1565 at 1638.133 kb on + strand, within Dsui_1565 at 1638.186 kb on - strand at 1638.436 kb on - strand at 1638.453 kb on - strand, within Dsui_1565 at 1638.527 kb on + strand, within Dsui_1565 at 1638.612 kb on - strand, within Dsui_1565 at 1638.630 kb on - strand, within Dsui_1565 at 1638.756 kb on + strand, within Dsui_1565 at 1638.784 kb on + strand, within Dsui_1565 at 1638.826 kb on - strand, within Dsui_1565 at 1638.885 kb on - strand, within Dsui_1565 at 1638.889 kb on - strand, within Dsui_1565 at 1638.895 kb on + strand, within Dsui_1565 at 1638.940 kb on + strand, within Dsui_1565 at 1638.948 kb on - strand, within Dsui_1565 at 1638.970 kb on - strand, within Dsui_1565 at 1638.989 kb on + strand at 1639.029 kb on - strand at 1639.031 kb on - strand at 1639.173 kb on + strand at 1639.181 kb on - strand at 1639.193 kb on - strand at 1639.239 kb on + strand at 1639.339 kb on + strand at 1639.363 kb on + strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.379 kb on - strand at 1639.524 kb on + strand, within Dsui_1566 at 1639.716 kb on - strand, within Dsui_1566 at 1639.830 kb on - strand, within Dsui_1566 at 1639.867 kb on + strand at 1639.898 kb on + strand, within Dsui_1566 at 1639.927 kb on - strand, within Dsui_1566 at 1639.953 kb on + strand at 1639.961 kb on - strand at 1640.012 kb on + strand at 1640.164 kb on + strand, within Dsui_1567 at 1640.172 kb on - strand, within Dsui_1567
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,635,797 - Dsui_1564 0.81 -0.6 1,635,851 + Dsui_1564 0.83 -0.3 1,635,881 + Dsui_1564 0.84 +0.7 1,635,919 + Dsui_1564 0.85 -1.6 1,635,926 - Dsui_1564 0.85 -0.7 1,635,927 - Dsui_1564 0.85 +0.7 1,635,936 - Dsui_1564 0.85 +1.3 1,636,060 + Dsui_1564 0.88 +0.7 1,636,082 + Dsui_1564 0.89 -0.9 1,636,087 + Dsui_1564 0.89 -0.9 1,636,097 + Dsui_1564 0.89 -0.3 1,636,105 - Dsui_1564 0.89 -0.0 1,636,105 - Dsui_1564 0.89 -0.4 1,636,125 + Dsui_1564 0.90 -0.3 1,636,144 + -1.9 1,636,272 - +0.0 1,636,431 - -1.0 1,636,439 + -1.6 1,636,439 + -0.3 1,636,447 - +0.1 1,636,524 - +0.2 1,636,669 + -0.9 1,636,723 + -1.3 1,636,723 + -1.6 1,636,731 - +0.7 1,636,731 - -0.9 1,636,862 + -3.1 1,636,975 - Dsui_1565 0.11 -0.9 1,637,133 - +0.7 1,637,195 - Dsui_1565 0.20 +0.7 1,637,340 + Dsui_1565 0.25 -0.3 1,637,358 - Dsui_1565 0.26 -0.3 1,637,358 - Dsui_1565 0.26 -0.3 1,637,358 - Dsui_1565 0.26 +0.7 1,637,429 + Dsui_1565 0.29 +0.7 1,637,507 - Dsui_1565 0.32 -2.1 1,637,597 + Dsui_1565 0.35 -0.3 1,637,939 + Dsui_1565 0.49 -2.3 1,638,106 + Dsui_1565 0.55 -1.6 1,638,114 - Dsui_1565 0.56 -0.3 1,638,133 + Dsui_1565 0.57 -1.3 1,638,186 - -0.3 1,638,436 - +0.7 1,638,453 - Dsui_1565 0.69 -0.3 1,638,527 + Dsui_1565 0.72 -0.3 1,638,612 - Dsui_1565 0.75 -0.9 1,638,630 - Dsui_1565 0.76 -1.3 1,638,756 + Dsui_1565 0.81 -1.9 1,638,784 + Dsui_1565 0.82 +0.7 1,638,826 - Dsui_1565 0.84 -0.9 1,638,885 - Dsui_1565 0.86 -0.3 1,638,889 - Dsui_1565 0.86 -1.6 1,638,895 + Dsui_1565 0.86 -1.6 1,638,940 + Dsui_1565 0.88 -0.3 1,638,948 - Dsui_1565 0.89 +0.7 1,638,970 - Dsui_1565 0.89 +0.7 1,638,989 + -0.3 1,639,029 - -1.6 1,639,031 - -0.9 1,639,173 + +0.7 1,639,181 - +0.7 1,639,193 - +0.7 1,639,239 + -2.7 1,639,339 + -1.3 1,639,363 + Dsui_1566 0.13 +0.7 1,639,371 - Dsui_1566 0.14 -0.3 1,639,371 - Dsui_1566 0.14 -0.6 1,639,371 - Dsui_1566 0.14 -2.9 1,639,371 - Dsui_1566 0.14 -1.7 1,639,379 - -0.3 1,639,524 + Dsui_1566 0.33 -0.3 1,639,716 - Dsui_1566 0.56 +0.0 1,639,830 - Dsui_1566 0.70 -0.2 1,639,867 + +0.7 1,639,898 + Dsui_1566 0.79 -1.3 1,639,927 - Dsui_1566 0.82 -1.4 1,639,953 + +0.7 1,639,961 - +0.7 1,640,012 + -1.3 1,640,164 + Dsui_1567 0.14 +0.7 1,640,172 - Dsui_1567 0.15 -0.6
Or see this region's nucleotide sequence