Strain Fitness in Dechlorosoma suillum PS around Dsui_1562

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1561 and Dsui_1562 are separated by 185 nucleotidesDsui_1562 and Dsui_1563 are separated by 20 nucleotides Dsui_1561: Dsui_1561 - transketolase, at 1,628,534 to 1,630,519 _1561 Dsui_1562: Dsui_1562 - phosphoribulokinase, at 1,630,705 to 1,631,580 _1562 Dsui_1563: Dsui_1563 - fructose-1,6-bisphosphatase, at 1,631,601 to 1,632,599 _1563 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -2 -1 0 1at 1630.652 kb on + strandat 1630.670 kb on - strandat 1630.741 kb on + strandat 1630.810 kb on - strand, within Dsui_1562at 1630.843 kb on - strand, within Dsui_1562at 1630.849 kb on + strand, within Dsui_1562at 1630.890 kb on - strand, within Dsui_1562at 1630.931 kb on + strandat 1630.940 kb on - strand, within Dsui_1562at 1630.942 kb on + strand, within Dsui_1562at 1631.187 kb on + strand, within Dsui_1562at 1631.416 kb on + strand, within Dsui_1562at 1631.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,630,652 + +0.7
1,630,670 - -1.6
1,630,741 + +0.7
1,630,810 - Dsui_1562 0.12 -2.2
1,630,843 - Dsui_1562 0.16 -1.4
1,630,849 + Dsui_1562 0.16 -0.3
1,630,890 - Dsui_1562 0.21 -0.9
1,630,931 + +0.7
1,630,940 - Dsui_1562 0.27 -0.9
1,630,942 + Dsui_1562 0.27 -1.3
1,631,187 + Dsui_1562 0.55 -0.3
1,631,416 + Dsui_1562 0.81 +0.7
1,631,543 - -0.8

Or see this region's nucleotide sequence