Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0799 and Dsui_0800 are separated by 70 nucleotides Dsui_0800 and Dsui_0801 are separated by 231 nucleotides Dsui_0801 and Dsui_0802 are separated by 18 nucleotides Dsui_0802 and Dsui_0803 are separated by 117 nucleotides
Dsui_0799: Dsui_0799 - succinate CoA transferase, at 804,811 to 806,370
_0799
Dsui_0800: Dsui_0800 - hypothetical protein (DUF2059), at 806,441 to 806,956
_0800
Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078
_0801
Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798
_0802
Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168
_0803
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.255 kb on + strand at 806.263 kb on - strand at 806.275 kb on + strand at 806.312 kb on - strand at 806.357 kb on - strand at 806.364 kb on + strand at 806.401 kb on - strand at 806.415 kb on - strand at 806.439 kb on + strand at 806.439 kb on + strand at 806.447 kb on - strand at 806.491 kb on - strand at 806.493 kb on + strand, within Dsui_0800 at 806.501 kb on - strand, within Dsui_0800 at 806.501 kb on - strand, within Dsui_0800 at 806.543 kb on + strand, within Dsui_0800 at 806.601 kb on - strand, within Dsui_0800 at 806.610 kb on + strand at 806.684 kb on + strand, within Dsui_0800 at 806.784 kb on + strand, within Dsui_0800 at 806.797 kb on - strand, within Dsui_0800 at 806.802 kb on + strand, within Dsui_0800 at 806.809 kb on - strand, within Dsui_0800 at 806.810 kb on - strand, within Dsui_0800 at 806.901 kb on + strand, within Dsui_0800 at 806.946 kb on + strand at 806.988 kb on - strand at 807.170 kb on - strand at 807.178 kb on + strand at 807.186 kb on - strand at 807.228 kb on - strand at 807.328 kb on - strand, within Dsui_0801 at 807.344 kb on + strand, within Dsui_0801 at 807.460 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.582 kb on - strand, within Dsui_0801 at 807.604 kb on - strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.888 kb on - strand, within Dsui_0801 at 807.889 kb on - strand at 807.955 kb on - strand at 807.955 kb on - strand, within Dsui_0801 at 807.976 kb on + strand, within Dsui_0801 at 807.994 kb on - strand at 808.011 kb on + strand at 808.021 kb on + strand at 808.132 kb on + strand at 808.153 kb on - strand at 808.186 kb on - strand, within Dsui_0802 at 808.214 kb on - strand, within Dsui_0802 at 808.340 kb on - strand, within Dsui_0802 at 808.341 kb on + strand, within Dsui_0802 at 808.382 kb on - strand, within Dsui_0802 at 808.393 kb on - strand at 808.393 kb on - strand, within Dsui_0802 at 808.624 kb on - strand, within Dsui_0802 at 808.671 kb on - strand, within Dsui_0802 at 808.691 kb on - strand, within Dsui_0802 at 808.776 kb on + strand at 808.879 kb on - strand at 808.891 kb on + strand at 808.923 kb on - strand at 808.940 kb on + strand at 808.946 kb on + strand at 809.005 kb on + strand at 809.012 kb on + strand at 809.020 kb on - strand at 809.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 806,255 + -0.6 806,263 - -0.1 806,275 + -0.2 806,312 - -0.7 806,357 - -0.1 806,364 + +0.2 806,401 - +0.6 806,415 - -0.1 806,439 + +0.9 806,439 + +0.9 806,447 - -0.4 806,491 - -0.2 806,493 + Dsui_0800 0.10 -1.1 806,501 - Dsui_0800 0.12 +0.1 806,501 - Dsui_0800 0.12 +0.7 806,543 + Dsui_0800 0.20 +0.9 806,601 - Dsui_0800 0.31 -0.4 806,610 + -0.1 806,684 + Dsui_0800 0.47 -0.7 806,784 + Dsui_0800 0.66 -1.1 806,797 - Dsui_0800 0.69 +0.5 806,802 + Dsui_0800 0.70 -1.4 806,809 - Dsui_0800 0.71 +1.4 806,810 - Dsui_0800 0.72 +0.2 806,901 + Dsui_0800 0.89 +0.9 806,946 + +0.9 806,988 - -1.1 807,170 - +0.9 807,178 + +0.1 807,186 - -1.9 807,228 - -0.1 807,328 - Dsui_0801 0.16 +0.9 807,344 + Dsui_0801 0.18 -1.0 807,460 + Dsui_0801 0.31 +0.8 807,510 + Dsui_0801 0.36 -0.2 807,510 + Dsui_0801 0.36 +0.2 807,510 + Dsui_0801 0.36 +0.4 807,582 - Dsui_0801 0.44 +1.9 807,604 - Dsui_0801 0.47 -1.1 807,880 + Dsui_0801 0.78 +0.5 807,880 + Dsui_0801 0.78 -0.2 807,888 - Dsui_0801 0.79 -1.7 807,889 - -0.1 807,955 - +0.9 807,955 - Dsui_0801 0.86 -0.1 807,976 + Dsui_0801 0.88 -0.2 807,994 - -0.1 808,011 + +0.6 808,021 + -1.3 808,132 + -1.2 808,153 - +0.9 808,186 - Dsui_0802 0.13 -0.1 808,214 - Dsui_0802 0.17 +0.9 808,340 - Dsui_0802 0.35 -0.7 808,341 + Dsui_0802 0.35 -0.5 808,382 - Dsui_0802 0.41 -1.9 808,393 - -0.1 808,393 - Dsui_0802 0.42 -0.7 808,624 - Dsui_0802 0.75 +0.9 808,671 - Dsui_0802 0.82 -1.9 808,691 - Dsui_0802 0.85 -2.9 808,776 + -0.2 808,879 - +0.9 808,891 + -1.4 808,923 - -0.7 808,940 + -0.7 808,946 + -0.2 809,005 + -0.8 809,012 + +1.1 809,020 - +0.9 809,030 - -0.1
Or see this region's nucleotide sequence