Strain Fitness in Dechlorosoma suillum PS around Dsui_0293

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0292 and Dsui_0293 are separated by 61 nucleotidesDsui_0293 and Dsui_0294 are separated by 70 nucleotides Dsui_0292: Dsui_0292 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 291,307 to 292,698 _0292 Dsui_0293: Dsui_0293 - PilZ domain-containing protein, at 292,760 to 293,338 _0293 Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920 _0294 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 291.771 kb on - strand, within Dsui_0292at 291.791 kb on + strand, within Dsui_0292at 291.858 kb on + strandat 291.878 kb on + strandat 291.995 kb on - strand, within Dsui_0292at 292.013 kb on + strand, within Dsui_0292at 292.065 kb on - strandat 292.065 kb on - strand, within Dsui_0292at 292.065 kb on - strand, within Dsui_0292at 292.118 kb on + strand, within Dsui_0292at 292.118 kb on - strandat 292.470 kb on + strandat 292.912 kb on + strandat 292.929 kb on - strand, within Dsui_0293at 292.965 kb on - strand, within Dsui_0293at 292.966 kb on - strand, within Dsui_0293at 293.014 kb on + strand, within Dsui_0293at 293.144 kb on + strand, within Dsui_0293at 293.209 kb on - strand, within Dsui_0293at 293.251 kb on - strand, within Dsui_0293at 293.269 kb on - strand, within Dsui_0293at 293.343 kb on + strandat 293.519 kb on + strandat 293.591 kb on - strand, within Dsui_0294at 293.633 kb on + strand, within Dsui_0294at 293.687 kb on + strand, within Dsui_0294at 293.711 kb on + strandat 293.826 kb on - strand, within Dsui_0294at 293.833 kb on + strand, within Dsui_0294at 293.868 kb on - strand, within Dsui_0294at 293.900 kb on + strand, within Dsui_0294at 293.974 kb on + strandat 294.021 kb on + strand, within Dsui_0294at 294.043 kb on + strandat 294.053 kb on + strand, within Dsui_0294at 294.200 kb on - strandat 294.268 kb on - strand, within Dsui_0294at 294.324 kb on + strand, within Dsui_0294at 294.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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291,771 - Dsui_0292 0.33 -0.4
291,791 + Dsui_0292 0.35 -2.0
291,858 + +0.8
291,878 + +0.8
291,995 - Dsui_0292 0.49 -0.8
292,013 + Dsui_0292 0.51 -0.2
292,065 - -0.2
292,065 - Dsui_0292 0.54 +0.2
292,065 - Dsui_0292 0.54 -0.4
292,118 + Dsui_0292 0.58 +0.8
292,118 - +0.8
292,470 + -1.2
292,912 + +0.8
292,929 - Dsui_0293 0.29 +0.1
292,965 - Dsui_0293 0.35 +0.5
292,966 - Dsui_0293 0.36 -0.1
293,014 + Dsui_0293 0.44 -0.2
293,144 + Dsui_0293 0.66 +0.8
293,209 - Dsui_0293 0.78 -0.2
293,251 - Dsui_0293 0.85 -1.8
293,269 - Dsui_0293 0.88 -0.4
293,343 + -1.5
293,519 + +1.8
293,591 - Dsui_0294 0.12 +0.8
293,633 + Dsui_0294 0.15 -0.8
293,687 + Dsui_0294 0.18 -0.2
293,711 + -0.2
293,826 - Dsui_0294 0.28 -1.2
293,833 + Dsui_0294 0.28 -0.1
293,868 - Dsui_0294 0.30 -0.8
293,900 + Dsui_0294 0.32 +0.2
293,974 + +0.8
294,021 + Dsui_0294 0.40 +0.8
294,043 + -0.2
294,053 + Dsui_0294 0.43 -0.2
294,200 - -0.2
294,268 - Dsui_0294 0.57 -1.8
294,324 + Dsui_0294 0.61 +1.8
294,332 - -0.2

Or see this region's nucleotide sequence