Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03184

Experiment: PYE 30C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 30C survival rep2 12 days
3,343,093	-		CCNA_03183	0.50	+1.3
3,343,140	+		CCNA_03183	0.53	-2.8
3,343,141	-		CCNA_03183	0.53	+0.3
3,343,216	+		CCNA_03183	0.57	-0.5
3,343,222	+		CCNA_03183	0.58	-1.1
3,343,222	+		CCNA_03183	0.58	+0.4
3,343,229	-		CCNA_03183	0.58	-1.5
3,343,233	+		CCNA_03183	0.59	-0.2
3,343,241	-		CCNA_03183	0.59	-1.7
3,343,241	-		CCNA_03183	0.59	+0.1
3,343,269	+		CCNA_03183	0.61	-0.6
3,343,289	-		CCNA_03183	0.62	-2.8
3,343,294	-		CCNA_03183	0.62	-1.4
3,343,302	+		CCNA_03183	0.63	+0.6
3,343,326	+		CCNA_03183	0.64	+0.6
3,343,340	+		CCNA_03183	0.65	-0.3
3,343,345	+		CCNA_03183	0.65	-2.9
3,343,356	+		CCNA_03183	0.66	-1.6
3,343,364	-		CCNA_03183	0.67	-1.4
3,343,409	-		CCNA_03183	0.69	-1.1
3,343,420	-		CCNA_03183	0.70	-2.8
3,343,450	+		CCNA_03183	0.72	-1.0
3,343,456	+		CCNA_03183	0.72	-1.4
3,343,456	+		CCNA_03183	0.72	-2.9
3,343,457	+		CCNA_03183	0.72	-1.8
3,343,457	+		CCNA_03183	0.72	-0.6
3,343,464	-		CCNA_03183	0.73	-0.9
3,343,464	-		CCNA_03183	0.73	-2.4
3,343,469	+		CCNA_03183	0.73	-0.1
3,343,482	-		CCNA_03183	0.74	-0.5
3,343,483	-		CCNA_03183	0.74	-1.4
3,343,540	+		CCNA_03183	0.78	+1.9
3,343,540	+		CCNA_03183	0.78	+1.9
3,343,540	+		CCNA_03183	0.78	+2.9
3,343,540	+		CCNA_03183	0.78	-1.4
3,343,540	+		CCNA_03183	0.78	-0.8
3,343,540	+		CCNA_03183	0.78	-2.6
3,343,548	-		CCNA_03183	0.78	-2.3
3,343,548	-		CCNA_03183	0.78	+0.9
3,343,548	-		CCNA_03183	0.78	+2.6
3,343,548	-		CCNA_03183	0.78	-0.4
3,343,548	-		CCNA_03183	0.78	-1.6
3,343,548	-		CCNA_03183	0.78	-1.3
3,343,577	-		CCNA_03183	0.80	-0.4
3,343,578	+		CCNA_03183	0.80	-1.7
3,343,586	-		CCNA_03183	0.80	-1.1
3,343,586	-		CCNA_03183	0.80	+0.7
3,343,592	+		CCNA_03183	0.81	-1.7
3,343,600	-		CCNA_03183	0.81	-1.6
3,343,614	+		CCNA_03183	0.82	-0.2
3,343,614	+		CCNA_03183	0.82	-2.3
3,343,614	+		CCNA_03183	0.82	+0.4
3,343,616	-		CCNA_03183	0.82	+0.6
3,343,622	+		CCNA_03183	0.83	-1.6
3,343,622	-		CCNA_03183	0.83	+1.9
3,343,686	+		CCNA_03183	0.87	-0.0
3,343,692	+		CCNA_03183	0.87	-1.6
3,343,694	-		CCNA_03183	0.87	+2.9
3,343,697	+		CCNA_03183	0.87	-0.1
3,343,700	-		CCNA_03183	0.88	-1.3
3,343,733	+		CCNA_03183	0.90	-3.4
3,343,741	-				+2.7
3,343,741	-				+0.3
3,343,848	-				-1.1
3,343,854	-				-0.8
3,343,854	-				-0.8
3,343,887	+				-1.9
3,343,897	+				-0.4
3,343,897	+				-1.8
3,343,897	+				+0.5
3,343,897	+				-0.9
3,343,897	+				+0.5
3,343,905	-				+0.2
3,343,905	-				-1.0
3,343,923	+				-1.8
3,343,923	-				-0.2
3,344,011	-				-0.7
3,344,019	-				-0.2
3,344,033	-				-0.2
3,344,037	+				+1.4
3,344,058	-				+0.7
3,344,070	+				-0.1
3,344,087	+				-0.2
3,344,101	-				-2.6
3,344,101	-				-1.5
3,344,141	+				-0.2
3,344,218	+				-1.1
3,344,242	+		CCNA_03184	0.11	-0.1
3,344,277	+		CCNA_03184	0.13	+0.1
3,344,322	+		CCNA_03184	0.16	-2.6
3,344,322	+		CCNA_03184	0.16	+1.0
3,344,322	+		CCNA_03184	0.16	-0.4
3,344,330	-		CCNA_03184	0.16	-1.0
3,344,330	-		CCNA_03184	0.16	-1.6
3,344,330	-		CCNA_03184	0.16	+0.8
3,344,330	-		CCNA_03184	0.16	-1.7
3,344,330	-		CCNA_03184	0.16	-0.1
3,344,330	-		CCNA_03184	0.16	-1.2
3,344,330	-		CCNA_03184	0.16	+1.1
3,344,374	-		CCNA_03184	0.19	+0.6
3,344,386	+		CCNA_03184	0.20	+0.7
3,344,386	+		CCNA_03184	0.20	+0.1
3,344,395	-		CCNA_03184	0.20	-1.8
3,344,409	+		CCNA_03184	0.21	-0.6
3,344,410	-		CCNA_03184	0.21	-0.6
3,344,410	-		CCNA_03184	0.21	-0.1
3,344,410	-		CCNA_03184	0.21	+0.5
3,344,436	+		CCNA_03184	0.23	-0.8
3,344,446	+		CCNA_03184	0.23	-1.0
3,344,454	-		CCNA_03184	0.24	-2.2
3,344,470	+		CCNA_03184	0.25	+2.1
3,344,474	-		CCNA_03184	0.25	-0.1
3,344,474	-		CCNA_03184	0.25	-1.3
3,344,483	+		CCNA_03184	0.25	-0.2
3,344,503	+		CCNA_03184	0.26	-0.2
3,344,536	-		CCNA_03184	0.28	-1.7
3,344,581	+		CCNA_03184	0.31	-0.1
3,344,589	-		CCNA_03184	0.32	-1.7
3,344,589	-		CCNA_03184	0.32	-0.6
3,344,609	+		CCNA_03184	0.33	-1.6
3,344,621	+		CCNA_03184	0.33	-2.5
3,344,665	+		CCNA_03184	0.36	+2.9
3,344,665	+				+0.9
3,344,665	+		CCNA_03184	0.36	-0.5
3,344,673	-		CCNA_03184	0.37	-1.5
3,344,703	+		CCNA_03184	0.38	-0.4
3,344,708	+		CCNA_03184	0.39	-0.5
3,344,725	+		CCNA_03184	0.40	-0.4
3,344,732	+		CCNA_03184	0.40	+0.6
3,344,740	-		CCNA_03184	0.40	+0.4
3,344,804	-		CCNA_03184	0.44	-0.8
3,344,809	-		CCNA_03184	0.45	-0.8
3,344,934	+		CCNA_03184	0.52	-1.7
3,344,942	-		CCNA_03184	0.52	-0.7
3,344,946	-		CCNA_03184	0.53	-1.0
3,345,016	-		CCNA_03184	0.57	-0.2
3,345,024	-		CCNA_03184	0.57	-3.0
3,345,030	+		CCNA_03184	0.58	-0.5
3,345,038	-		CCNA_03184	0.58	+0.1
3,345,066	-		CCNA_03184	0.60	-2.8
3,345,066	-		CCNA_03184	0.60	-0.6
3,345,179	+		CCNA_03184	0.66	-1.6
3,345,180	+		CCNA_03184	0.66	-0.1
3,345,188	-		CCNA_03184	0.67	-0.0
3,345,188	-		CCNA_03184	0.67	+0.1
3,345,220	+		CCNA_03184	0.69	-0.8
3,345,229	+		CCNA_03184	0.69	+0.6
3,345,237	-		CCNA_03184	0.70	-0.9
3,345,258	+		CCNA_03184	0.71	+0.9
3,345,266	-		CCNA_03184	0.72	-0.8
3,345,312	+		CCNA_03184	0.74	+0.4
3,345,317	+		CCNA_03184	0.75	-0.4
3,345,325	-		CCNA_03184	0.75	-2.4
3,345,325	-		CCNA_03184	0.75	-0.2
3,345,325	-		CCNA_03184	0.75	-2.9
3,345,341	+		CCNA_03184	0.76	-0.2
3,345,341	+		CCNA_03184	0.76	+0.6
3,345,349	-		CCNA_03184	0.76	+2.1
3,345,349	-		CCNA_03184	0.76	-1.0
3,345,367	+		CCNA_03184	0.77	-1.8
3,345,392	-		CCNA_03184	0.79	-0.8
3,345,431	-		CCNA_03184	0.81	-1.9
3,345,435	+		CCNA_03184	0.81	+0.4
3,345,472	-		CCNA_03184	0.84	+1.2
3,345,479	+		CCNA_03184	0.84	-1.7
3,345,566	+		CCNA_03184	0.89	+2.9
3,345,569	-		CCNA_03184	0.89	-2.3
3,345,631	-				+1.1
3,345,648	+				+0.4
3,345,656	-				-1.4
3,345,666	-				-2.3
3,345,696	-				-1.5
3,345,707	+				+1.9
3,345,744	+				-0.5
3,345,746	-				-1.0
3,345,749	+				+1.1
3,345,757	-				-0.6
3,345,813	+				-1.2
3,345,906	+				+1.1
3,345,924	+		CCNA_03185	0.11	-2.1
3,345,954	+		CCNA_03185	0.16	-0.2
3,345,984	+		CCNA_03185	0.21	+0.2
3,346,015	-		CCNA_03185	0.26	+1.1
3,346,113	-		CCNA_03185	0.41	-2.0
3,346,130	+		CCNA_03185	0.44	-1.9
3,346,133	+		CCNA_03185	0.45	+3.8
3,346,142	+		CCNA_03185	0.46	-1.9
3,346,146	+		CCNA_03185	0.47	+0.9
3,346,148	+		CCNA_03185	0.47	-1.5
3,346,154	-		CCNA_03185	0.48	-2.2
3,346,154	-		CCNA_03185	0.48	-0.6
3,346,158	+		CCNA_03185	0.49	-1.6
3,346,204	-		CCNA_03185	0.56	+1.2
3,346,215	-		CCNA_03185	0.58	-1.9
3,346,250	-		CCNA_03185	0.63	+0.2
3,346,279	+		CCNA_03185	0.68	-1.1
3,346,289	+		CCNA_03185	0.70	+0.9
3,346,312	+		CCNA_03185	0.73	+0.1
3,346,320	-		CCNA_03185	0.74	+1.9
3,346,335	+		CCNA_03185	0.77	-2.0
3,346,370	-		CCNA_03185	0.82	-2.3
3,346,376	-		CCNA_03185	0.83	+1.2
3,346,422	-				+0.9
3,346,429	+				+0.2
3,346,437	-				-1.3
3,346,439	-				-0.2
3,346,446	+				+0.3
3,346,446	+				+0.6
3,346,450	-				+0.6
3,346,454	-				-1.0
3,346,454	-				-0.8
3,346,491	+				-1.5
3,346,493	-				+0.4
3,346,498	+				-1.6
3,346,498	+				+0.1
3,346,529	-				+0.2
3,346,562	+				-0.1
3,346,562	+				-1.4
3,346,562	+				-1.4
3,346,562	+				-2.1
3,346,570	-				+1.0
3,346,570	-				+0.9
3,346,575	-				-1.2
3,346,576	-				-0.1
3,346,584	+				-1.2
3,346,585	+				+2.9
3,346,593	-				+1.1
3,346,627	-		CCNA_03186	0.13	+0.3
3,346,627	-		CCNA_03186	0.13	+1.2
3,346,632	+		CCNA_03186	0.13	-0.1
3,346,632	+		CCNA_03186	0.13	+1.0
3,346,632	+		CCNA_03186	0.13	-2.3
3,346,640	-		CCNA_03186	0.14	-1.9
3,346,640	-		CCNA_03186	0.14	+0.2
3,346,653	+				+0.9
3,346,683	-		CCNA_03186	0.18	-0.2
3,346,696	-		CCNA_03186	0.19	-3.0
3,346,716	+		CCNA_03186	0.21	+0.3
3,346,724	-		CCNA_03186	0.21	-1.1
3,346,724	-		CCNA_03186	0.21	+1.5
3,346,746	+		CCNA_03186	0.23	+0.9
3,346,747	-		CCNA_03186	0.23	+1.2