Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01821

Experiment: PYE 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01820 and CCNA_01821 overlap by 4 nucleotidesCCNA_01821 and CCNA_01822 overlap by 38 nucleotides CCNA_01820: CCNA_01820 - GTP-binding protein hflX, at 1,946,223 to 1,947,563 _01820 CCNA_01821: CCNA_01821 - MazG protein, at 1,947,560 to 1,948,387 _01821 CCNA_01822: CCNA_01822 - melibiose carrier protein, at 1,948,350 to 1,949,762 _01822 Position (kb) 1947 1948 1949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1946.580 kb on + strand, within CCNA_01820at 1946.588 kb on - strand, within CCNA_01820at 1946.610 kb on + strand, within CCNA_01820at 1946.650 kb on + strand, within CCNA_01820at 1946.653 kb on - strand, within CCNA_01820at 1946.653 kb on - strand, within CCNA_01820at 1946.653 kb on - strand, within CCNA_01820at 1946.656 kb on + strand, within CCNA_01820at 1946.676 kb on + strand, within CCNA_01820at 1946.681 kb on + strandat 1946.681 kb on + strand, within CCNA_01820at 1946.760 kb on - strand, within CCNA_01820at 1946.792 kb on + strand, within CCNA_01820at 1946.831 kb on + strand, within CCNA_01820at 1946.893 kb on - strand, within CCNA_01820at 1946.926 kb on + strand, within CCNA_01820at 1946.936 kb on + strand, within CCNA_01820at 1946.946 kb on + strand, within CCNA_01820at 1946.947 kb on - strand, within CCNA_01820at 1946.961 kb on + strand, within CCNA_01820at 1946.983 kb on + strand, within CCNA_01820at 1946.983 kb on + strand, within CCNA_01820at 1947.080 kb on + strand, within CCNA_01820at 1947.108 kb on + strand, within CCNA_01820at 1947.134 kb on + strand, within CCNA_01820at 1947.147 kb on + strand, within CCNA_01820at 1947.169 kb on - strand, within CCNA_01820at 1947.188 kb on - strand, within CCNA_01820at 1947.203 kb on + strand, within CCNA_01820at 1947.211 kb on - strand, within CCNA_01820at 1947.240 kb on - strand, within CCNA_01820at 1947.242 kb on + strand, within CCNA_01820at 1947.245 kb on + strand, within CCNA_01820at 1947.318 kb on + strand, within CCNA_01820at 1947.331 kb on - strand, within CCNA_01820at 1947.333 kb on - strand, within CCNA_01820at 1947.391 kb on - strand, within CCNA_01820at 1947.396 kb on + strand, within CCNA_01820at 1947.401 kb on + strand, within CCNA_01820at 1947.409 kb on - strand, within CCNA_01820at 1947.424 kb on - strand, within CCNA_01820at 1947.451 kb on - strandat 1947.498 kb on + strandat 1947.499 kb on - strandat 1947.542 kb on + strandat 1947.542 kb on + strandat 1947.543 kb on - strandat 1947.550 kb on - strandat 1947.550 kb on - strandat 1947.564 kb on + strandat 1947.587 kb on - strandat 1947.587 kb on - strandat 1947.625 kb on + strandat 1947.625 kb on + strandat 1947.633 kb on - strandat 1947.633 kb on - strandat 1947.706 kb on + strand, within CCNA_01821at 1947.760 kb on + strand, within CCNA_01821at 1947.912 kb on - strand, within CCNA_01821at 1947.963 kb on - strand, within CCNA_01821at 1947.968 kb on - strand, within CCNA_01821at 1947.968 kb on - strand, within CCNA_01821at 1947.974 kb on - strand, within CCNA_01821at 1947.980 kb on + strand, within CCNA_01821at 1947.988 kb on - strand, within CCNA_01821at 1948.012 kb on + strand, within CCNA_01821at 1948.025 kb on - strand, within CCNA_01821at 1948.033 kb on - strand, within CCNA_01821at 1948.059 kb on - strand, within CCNA_01821at 1948.088 kb on - strand, within CCNA_01821at 1948.114 kb on - strand, within CCNA_01821at 1948.156 kb on + strand, within CCNA_01821at 1948.166 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.176 kb on + strand, within CCNA_01821at 1948.179 kb on - strand, within CCNA_01821at 1948.184 kb on - strand, within CCNA_01821at 1948.220 kb on + strand, within CCNA_01821at 1948.262 kb on + strand, within CCNA_01821at 1948.275 kb on - strand, within CCNA_01821at 1948.306 kb on + strandat 1948.327 kb on + strandat 1948.402 kb on + strandat 1948.409 kb on + strandat 1948.518 kb on + strand, within CCNA_01822at 1948.525 kb on - strand, within CCNA_01822at 1948.559 kb on - strand, within CCNA_01822at 1948.559 kb on - strand, within CCNA_01822at 1948.589 kb on + strand, within CCNA_01822at 1948.646 kb on + strand, within CCNA_01822at 1948.646 kb on + strand, within CCNA_01822at 1948.669 kb on + strand, within CCNA_01822at 1948.674 kb on + strand, within CCNA_01822at 1948.676 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.677 kb on - strand, within CCNA_01822at 1948.682 kb on - strand, within CCNA_01822at 1948.701 kb on + strand, within CCNA_01822at 1948.712 kb on + strand, within CCNA_01822at 1948.720 kb on - strand, within CCNA_01822at 1948.767 kb on + strand, within CCNA_01822at 1948.770 kb on - strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.802 kb on + strand, within CCNA_01822at 1948.810 kb on - strand, within CCNA_01822at 1948.819 kb on + strand, within CCNA_01822at 1948.819 kb on + strand, within CCNA_01822at 1948.821 kb on + strand, within CCNA_01822at 1948.821 kb on + strand, within CCNA_01822at 1948.827 kb on - strand, within CCNA_01822at 1948.829 kb on - strand, within CCNA_01822at 1948.829 kb on - strand, within CCNA_01822at 1948.836 kb on + strand, within CCNA_01822at 1948.848 kb on + strand, within CCNA_01822at 1948.857 kb on - strand, within CCNA_01822at 1948.904 kb on + strand, within CCNA_01822at 1948.912 kb on - strand, within CCNA_01822at 1948.912 kb on - strand, within CCNA_01822at 1948.917 kb on - strand, within CCNA_01822at 1948.949 kb on - strand, within CCNA_01822at 1948.955 kb on - strand, within CCNA_01822at 1948.973 kb on - strand, within CCNA_01822at 1948.975 kb on - strand, within CCNA_01822at 1948.977 kb on + strand, within CCNA_01822at 1948.979 kb on - strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.984 kb on + strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1948.992 kb on - strand, within CCNA_01822at 1949.059 kb on - strand, within CCNA_01822at 1949.067 kb on + strand, within CCNA_01822at 1949.124 kb on - strand, within CCNA_01822at 1949.155 kb on - strand, within CCNA_01822at 1949.195 kb on + strand, within CCNA_01822at 1949.203 kb on - strand, within CCNA_01822at 1949.220 kb on - strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.236 kb on + strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.244 kb on - strand, within CCNA_01822at 1949.256 kb on + strand, within CCNA_01822at 1949.313 kb on + strand, within CCNA_01822at 1949.321 kb on + strand, within CCNA_01822at 1949.321 kb on + strand, within CCNA_01822at 1949.321 kb on - strand, within CCNA_01822at 1949.322 kb on - strand, within CCNA_01822at 1949.329 kb on - strand, within CCNA_01822at 1949.336 kb on - strand, within CCNA_01822at 1949.346 kb on + strand, within CCNA_01822at 1949.354 kb on - strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strandat 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.368 kb on + strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822at 1949.376 kb on - strand, within CCNA_01822

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 12 days
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1,946,580 + CCNA_01820 0.27 +0.9
1,946,588 - CCNA_01820 0.27 +0.5
1,946,610 + CCNA_01820 0.29 -2.6
1,946,650 + CCNA_01820 0.32 +0.8
1,946,653 - CCNA_01820 0.32 +0.0
1,946,653 - CCNA_01820 0.32 -1.7
1,946,653 - CCNA_01820 0.32 +0.3
1,946,656 + CCNA_01820 0.32 +2.7
1,946,676 + CCNA_01820 0.34 +0.2
1,946,681 + +0.7
1,946,681 + CCNA_01820 0.34 -0.3
1,946,760 - CCNA_01820 0.40 -2.4
1,946,792 + CCNA_01820 0.42 -2.0
1,946,831 + CCNA_01820 0.45 -0.7
1,946,893 - CCNA_01820 0.50 -1.0
1,946,926 + CCNA_01820 0.52 -0.8
1,946,936 + CCNA_01820 0.53 +0.4
1,946,946 + CCNA_01820 0.54 -0.0
1,946,947 - CCNA_01820 0.54 +3.0
1,946,961 + CCNA_01820 0.55 -0.5
1,946,983 + CCNA_01820 0.57 +0.0
1,946,983 + CCNA_01820 0.57 +0.9
1,947,080 + CCNA_01820 0.64 -2.9
1,947,108 + CCNA_01820 0.66 -1.2
1,947,134 + CCNA_01820 0.68 -1.4
1,947,147 + CCNA_01820 0.69 -0.3
1,947,169 - CCNA_01820 0.71 +0.8
1,947,188 - CCNA_01820 0.72 +1.0
1,947,203 + CCNA_01820 0.73 -0.8
1,947,211 - CCNA_01820 0.74 -0.3
1,947,240 - CCNA_01820 0.76 +1.5
1,947,242 + CCNA_01820 0.76 +0.3
1,947,245 + CCNA_01820 0.76 -1.4
1,947,318 + CCNA_01820 0.82 -1.8
1,947,331 - CCNA_01820 0.83 +0.2
1,947,333 - CCNA_01820 0.83 -1.3
1,947,391 - CCNA_01820 0.87 +0.2
1,947,396 + CCNA_01820 0.87 -1.5
1,947,401 + CCNA_01820 0.88 -0.6
1,947,409 - CCNA_01820 0.88 +0.7
1,947,424 - CCNA_01820 0.90 -0.4
1,947,451 - -0.5
1,947,498 + -0.3
1,947,499 - +0.8
1,947,542 + +0.3
1,947,542 + -0.6
1,947,543 - -0.0
1,947,550 - +0.2
1,947,550 - -1.5
1,947,564 + -0.4
1,947,587 - -1.2
1,947,587 - -1.1
1,947,625 + -0.5
1,947,625 + +1.1
1,947,633 - -0.6
1,947,633 - -1.3
1,947,706 + CCNA_01821 0.18 -1.6
1,947,760 + CCNA_01821 0.24 +0.3
1,947,912 - CCNA_01821 0.43 +0.8
1,947,963 - CCNA_01821 0.49 -0.3
1,947,968 - CCNA_01821 0.49 -1.0
1,947,968 - CCNA_01821 0.49 -1.4
1,947,974 - CCNA_01821 0.50 -0.7
1,947,980 + CCNA_01821 0.51 +1.1
1,947,988 - CCNA_01821 0.52 -2.6
1,948,012 + CCNA_01821 0.55 -1.3
1,948,025 - CCNA_01821 0.56 -0.2
1,948,033 - CCNA_01821 0.57 -1.9
1,948,059 - CCNA_01821 0.60 -2.1
1,948,088 - CCNA_01821 0.64 -1.8
1,948,114 - CCNA_01821 0.67 -0.8
1,948,156 + CCNA_01821 0.72 -2.2
1,948,166 + CCNA_01821 0.73 -2.5
1,948,176 + CCNA_01821 0.74 -1.5
1,948,176 + CCNA_01821 0.74 -1.8
1,948,176 + CCNA_01821 0.74 -1.8
1,948,176 + CCNA_01821 0.74 -1.7
1,948,179 - CCNA_01821 0.75 +2.1
1,948,184 - CCNA_01821 0.75 -1.7
1,948,220 + CCNA_01821 0.80 +3.1
1,948,262 + CCNA_01821 0.85 +0.7
1,948,275 - CCNA_01821 0.86 -1.8
1,948,306 + +0.2
1,948,327 + +0.1
1,948,402 + +0.7
1,948,409 + -1.7
1,948,518 + CCNA_01822 0.12 +1.0
1,948,525 - CCNA_01822 0.12 +0.2
1,948,559 - CCNA_01822 0.15 +0.2
1,948,559 - CCNA_01822 0.15 -1.7
1,948,589 + CCNA_01822 0.17 +3.0
1,948,646 + CCNA_01822 0.21 +3.0
1,948,646 + CCNA_01822 0.21 +1.2
1,948,669 + CCNA_01822 0.23 -0.3
1,948,674 + CCNA_01822 0.23 +0.5
1,948,676 - CCNA_01822 0.23 -2.1
1,948,677 - CCNA_01822 0.23 -1.7
1,948,677 - CCNA_01822 0.23 +0.5
1,948,677 - CCNA_01822 0.23 -0.8
1,948,677 - CCNA_01822 0.23 +0.4
1,948,682 - CCNA_01822 0.23 -0.0
1,948,701 + CCNA_01822 0.25 -0.3
1,948,712 + CCNA_01822 0.26 -0.4
1,948,720 - CCNA_01822 0.26 +0.5
1,948,767 + CCNA_01822 0.30 -1.0
1,948,770 - CCNA_01822 0.30 -1.0
1,948,802 + CCNA_01822 0.32 -0.8
1,948,802 + CCNA_01822 0.32 -0.3
1,948,802 + CCNA_01822 0.32 +0.5
1,948,810 - CCNA_01822 0.33 -0.4
1,948,819 + CCNA_01822 0.33 -0.3
1,948,819 + CCNA_01822 0.33 +0.2
1,948,821 + CCNA_01822 0.33 +1.5
1,948,821 + CCNA_01822 0.33 +1.0
1,948,827 - CCNA_01822 0.34 -0.3
1,948,829 - CCNA_01822 0.34 -0.9
1,948,829 - CCNA_01822 0.34 +3.4
1,948,836 + CCNA_01822 0.34 +5.7
1,948,848 + CCNA_01822 0.35 +0.2
1,948,857 - CCNA_01822 0.36 -0.4
1,948,904 + CCNA_01822 0.39 +0.5
1,948,912 - CCNA_01822 0.40 -2.0
1,948,912 - CCNA_01822 0.40 -1.1
1,948,917 - CCNA_01822 0.40 -0.8
1,948,949 - CCNA_01822 0.42 -2.6
1,948,955 - CCNA_01822 0.43 -1.8
1,948,973 - CCNA_01822 0.44 +1.0
1,948,975 - CCNA_01822 0.44 +0.6
1,948,977 + CCNA_01822 0.44 +0.0
1,948,979 - CCNA_01822 0.45 +0.8
1,948,984 + CCNA_01822 0.45 +0.7
1,948,984 + CCNA_01822 0.45 +1.2
1,948,984 + CCNA_01822 0.45 -1.9
1,948,984 + CCNA_01822 0.45 -1.5
1,948,992 - CCNA_01822 0.45 +2.8
1,948,992 - CCNA_01822 0.45 +1.0
1,948,992 - CCNA_01822 0.45 -0.3
1,948,992 - CCNA_01822 0.45 +0.5
1,948,992 - CCNA_01822 0.45 +0.5
1,948,992 - CCNA_01822 0.45 -0.4
1,948,992 - CCNA_01822 0.45 -0.9
1,949,059 - CCNA_01822 0.50 -0.9
1,949,067 + CCNA_01822 0.51 +0.6
1,949,124 - CCNA_01822 0.55 -2.2
1,949,155 - CCNA_01822 0.57 -1.5
1,949,195 + CCNA_01822 0.60 +1.0
1,949,203 - CCNA_01822 0.60 -0.8
1,949,220 - CCNA_01822 0.62 -1.1
1,949,236 + CCNA_01822 0.63 +0.5
1,949,236 + CCNA_01822 0.63 +2.0
1,949,236 + CCNA_01822 0.63 +1.7
1,949,236 + CCNA_01822 0.63 +3.0
1,949,236 + CCNA_01822 0.63 +1.5
1,949,236 + CCNA_01822 0.63 +0.5
1,949,244 - CCNA_01822 0.63 +0.8
1,949,244 - CCNA_01822 0.63 +0.2
1,949,244 - CCNA_01822 0.63 +1.6
1,949,244 - CCNA_01822 0.63 +0.0
1,949,244 - CCNA_01822 0.63 -0.3
1,949,244 - CCNA_01822 0.63 +2.7
1,949,244 - CCNA_01822 0.63 +1.2
1,949,244 - CCNA_01822 0.63 +0.6
1,949,244 - CCNA_01822 0.63 +0.7
1,949,244 - CCNA_01822 0.63 -0.6
1,949,256 + CCNA_01822 0.64 +1.0
1,949,313 + CCNA_01822 0.68 +0.2
1,949,321 + CCNA_01822 0.69 +0.1
1,949,321 + CCNA_01822 0.69 -1.3
1,949,321 - CCNA_01822 0.69 -0.8
1,949,322 - CCNA_01822 0.69 -2.3
1,949,329 - CCNA_01822 0.69 -2.6
1,949,336 - CCNA_01822 0.70 +1.6
1,949,346 + CCNA_01822 0.70 -0.5
1,949,354 - CCNA_01822 0.71 -1.7
1,949,368 + CCNA_01822 0.72 -0.3
1,949,368 + CCNA_01822 0.72 -0.1
1,949,368 + CCNA_01822 0.72 +2.0
1,949,368 + CCNA_01822 0.72 +1.5
1,949,368 + +2.0
1,949,368 + CCNA_01822 0.72 +4.6
1,949,368 + CCNA_01822 0.72 +0.0
1,949,368 + CCNA_01822 0.72 -1.1
1,949,368 + CCNA_01822 0.72 +2.5
1,949,376 - CCNA_01822 0.73 +2.3
1,949,376 - CCNA_01822 0.73 +0.2
1,949,376 - CCNA_01822 0.73 -0.8
1,949,376 - CCNA_01822 0.73 -0.1
1,949,376 - CCNA_01822 0.73 +0.4
1,949,376 - CCNA_01822 0.73 +0.5
1,949,376 - CCNA_01822 0.73 -0.5

Or see this region's nucleotide sequence