Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00265

Experiment: PYE 30C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00264 and CCNA_00265 are separated by 379 nucleotidesCCNA_00265 and CCNA_00266 are separated by 127 nucleotides CCNA_00264: CCNA_00264 - C4-dicarboxylate transport protein, at 276,384 to 277,637 _00264 CCNA_00265: CCNA_00265 - AMP nucleosidase, at 278,017 to 279,471 _00265 CCNA_00266: CCNA_00266 - 3-ketoacyl-CoA thiolase, at 279,599 to 280,837 _00266 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 277.028 kb on - strand, within CCNA_00264at 277.106 kb on + strand, within CCNA_00264at 277.106 kb on + strand, within CCNA_00264at 277.114 kb on - strand, within CCNA_00264at 277.114 kb on - strand, within CCNA_00264at 277.186 kb on + strand, within CCNA_00264at 277.244 kb on + strand, within CCNA_00264at 277.305 kb on + strand, within CCNA_00264at 277.305 kb on + strand, within CCNA_00264at 277.313 kb on - strand, within CCNA_00264at 277.313 kb on - strandat 277.313 kb on - strand, within CCNA_00264at 277.313 kb on - strand, within CCNA_00264at 277.387 kb on + strand, within CCNA_00264at 277.395 kb on - strand, within CCNA_00264at 277.444 kb on - strand, within CCNA_00264at 277.491 kb on - strand, within CCNA_00264at 277.572 kb on + strandat 277.672 kb on - strandat 277.787 kb on - strandat 277.800 kb on + strandat 277.809 kb on + strandat 277.815 kb on - strandat 277.835 kb on - strandat 277.835 kb on - strandat 277.835 kb on - strandat 277.878 kb on + strandat 277.886 kb on - strandat 277.886 kb on - strandat 277.886 kb on - strandat 277.907 kb on - strandat 277.909 kb on - strandat 277.916 kb on + strandat 278.013 kb on - strandat 279.480 kb on - strandat 279.489 kb on - strandat 279.499 kb on - strandat 279.539 kb on - strandat 279.549 kb on - strandat 279.603 kb on - strandat 279.605 kb on - strandat 279.679 kb on + strandat 279.679 kb on + strandat 279.683 kb on - strandat 279.687 kb on - strandat 279.702 kb on - strandat 279.704 kb on + strandat 279.704 kb on + strandat 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.737 kb on + strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.745 kb on - strand, within CCNA_00266at 279.763 kb on + strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.770 kb on - strand, within CCNA_00266at 279.792 kb on - strand, within CCNA_00266at 279.792 kb on - strand, within CCNA_00266at 279.852 kb on - strand, within CCNA_00266at 279.852 kb on - strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.894 kb on + strand, within CCNA_00266at 279.902 kb on - strand, within CCNA_00266at 279.919 kb on + strand, within CCNA_00266at 279.919 kb on + strand, within CCNA_00266at 279.941 kb on + strand, within CCNA_00266at 279.975 kb on - strand, within CCNA_00266at 279.983 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 280.001 kb on + strand, within CCNA_00266at 280.004 kb on - strand, within CCNA_00266at 280.033 kb on + strand, within CCNA_00266at 280.069 kb on - strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.088 kb on - strand, within CCNA_00266at 280.110 kb on - strand, within CCNA_00266at 280.111 kb on - strand, within CCNA_00266at 280.118 kb on - strand, within CCNA_00266at 280.169 kb on + strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.222 kb on - strand, within CCNA_00266at 280.243 kb on + strand, within CCNA_00266at 280.249 kb on + strand, within CCNA_00266at 280.296 kb on - strand, within CCNA_00266at 280.337 kb on + strand, within CCNA_00266at 280.345 kb on + strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.385 kb on - strand, within CCNA_00266at 280.414 kb on + strand, within CCNA_00266at 280.432 kb on - strand, within CCNA_00266at 280.464 kb on + strand, within CCNA_00266

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 30C survival rep2 12 days
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277,028 - CCNA_00264 0.51 -2.3
277,106 + CCNA_00264 0.58 +0.7
277,106 + CCNA_00264 0.58 +1.2
277,114 - CCNA_00264 0.58 -0.7
277,114 - CCNA_00264 0.58 -1.6
277,186 + CCNA_00264 0.64 -0.6
277,244 + CCNA_00264 0.69 -2.8
277,305 + CCNA_00264 0.73 -0.6
277,305 + CCNA_00264 0.73 -1.6
277,313 - CCNA_00264 0.74 -0.9
277,313 - +1.7
277,313 - CCNA_00264 0.74 -2.0
277,313 - CCNA_00264 0.74 -0.7
277,387 + CCNA_00264 0.80 -0.8
277,395 - CCNA_00264 0.81 -0.3
277,444 - CCNA_00264 0.85 -1.6
277,491 - CCNA_00264 0.88 -1.4
277,572 + -0.3
277,672 - -0.1
277,787 - +0.4
277,800 + +3.0
277,809 + -0.7
277,815 - +1.8
277,835 - -0.7
277,835 - -1.2
277,835 - +1.4
277,878 + -0.9
277,886 - -1.2
277,886 - -2.6
277,886 - +0.7
277,907 - +3.0
277,909 - +1.9
277,916 + +0.2
278,013 - -0.1
279,480 - -1.2
279,489 - -3.3
279,499 - -1.6
279,539 - -1.9
279,549 - +1.2
279,603 - -0.6
279,605 - -0.2
279,679 + -1.5
279,679 + +0.2
279,683 - -2.5
279,687 - -1.2
279,702 - -0.1
279,704 + +1.2
279,704 + -1.2
279,737 + CCNA_00266 0.11 -0.6
279,737 + CCNA_00266 0.11 +2.9
279,737 + CCNA_00266 0.11 +0.0
279,737 + CCNA_00266 0.11 -1.0
279,737 + CCNA_00266 0.11 -1.0
279,745 - CCNA_00266 0.12 +1.4
279,745 - CCNA_00266 0.12 -1.1
279,745 - CCNA_00266 0.12 +0.6
279,763 + CCNA_00266 0.13 -1.2
279,770 - CCNA_00266 0.14 -1.0
279,770 - CCNA_00266 0.14 -0.3
279,770 - CCNA_00266 0.14 -0.0
279,792 - CCNA_00266 0.16 -0.5
279,792 - CCNA_00266 0.16 -0.7
279,852 - CCNA_00266 0.20 -0.3
279,852 - CCNA_00266 0.20 +0.7
279,894 + CCNA_00266 0.24 -0.3
279,894 + CCNA_00266 0.24 +0.7
279,894 + CCNA_00266 0.24 +2.5
279,902 - CCNA_00266 0.24 -1.3
279,919 + CCNA_00266 0.26 -0.5
279,919 + CCNA_00266 0.26 -1.9
279,941 + CCNA_00266 0.28 -2.1
279,975 - CCNA_00266 0.30 +2.5
279,983 - CCNA_00266 0.31 -1.5
279,993 - CCNA_00266 0.32 +2.0
279,993 - CCNA_00266 0.32 -2.2
279,993 - CCNA_00266 0.32 -2.4
280,001 + CCNA_00266 0.32 +1.0
280,004 - CCNA_00266 0.33 -0.5
280,033 + CCNA_00266 0.35 +0.8
280,069 - CCNA_00266 0.38 -1.9
280,080 + CCNA_00266 0.39 -1.1
280,080 + CCNA_00266 0.39 +0.8
280,088 - CCNA_00266 0.39 -0.8
280,110 - CCNA_00266 0.41 -1.2
280,111 - CCNA_00266 0.41 -1.5
280,118 - CCNA_00266 0.42 +0.6
280,169 + CCNA_00266 0.46 -0.4
280,177 - CCNA_00266 0.47 +2.0
280,177 - CCNA_00266 0.47 -1.6
280,188 + CCNA_00266 0.48 +0.1
280,188 + CCNA_00266 0.48 +0.2
280,214 + CCNA_00266 0.50 -1.2
280,214 + CCNA_00266 0.50 -1.9
280,222 - CCNA_00266 0.50 +3.1
280,243 + CCNA_00266 0.52 -0.9
280,249 + CCNA_00266 0.52 +0.7
280,296 - CCNA_00266 0.56 +0.7
280,337 + CCNA_00266 0.60 -2.6
280,345 + CCNA_00266 0.60 +0.6
280,345 - CCNA_00266 0.60 -2.6
280,345 - CCNA_00266 0.60 -1.2
280,385 - CCNA_00266 0.63 -0.0
280,414 + CCNA_00266 0.66 -0.4
280,432 - CCNA_00266 0.67 -1.5
280,464 + CCNA_00266 0.70 +1.5

Or see this region's nucleotide sequence