Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20320

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20310 and BWI76_RS20315 are separated by 56 nucleotidesBWI76_RS20315 and BWI76_RS20320 are separated by 41 nucleotidesBWI76_RS20320 and BWI76_RS20325 are separated by 7 nucleotidesBWI76_RS20325 and BWI76_RS20330 overlap by 4 nucleotides BWI76_RS20310: BWI76_RS20310 - hypothetical protein, at 4,253,610 to 4,254,176 _RS20310 BWI76_RS20315: BWI76_RS20315 - N-acetyltransferase, at 4,254,233 to 4,254,730 _RS20315 BWI76_RS20320: BWI76_RS20320 - histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP, at 4,254,772 to 4,255,545 _RS20320 BWI76_RS20325: BWI76_RS20325 - histidine/lysine/arginine/ornithine ABC transporter permease HisM, at 4,255,553 to 4,256,269 _RS20325 BWI76_RS20330: BWI76_RS20330 - histidine/lysine/arginine/ornithine ABC transporter permease HisQ, at 4,256,266 to 4,256,952 _RS20330 Position (kb) 4254 4255 4256Strain fitness (log2 ratio) -2 -1 0 1 2at 4254.107 kb on + strand, within BWI76_RS20310at 4254.107 kb on - strand, within BWI76_RS20310at 4254.115 kb on - strand, within BWI76_RS20310at 4254.122 kb on + strandat 4254.354 kb on + strand, within BWI76_RS20315at 4254.505 kb on - strand, within BWI76_RS20315at 4254.561 kb on + strand, within BWI76_RS20315at 4254.777 kb on - strandat 4255.231 kb on + strand, within BWI76_RS20320at 4255.312 kb on - strand, within BWI76_RS20320at 4255.478 kb on + strandat 4255.486 kb on - strandat 4255.487 kb on + strandat 4255.505 kb on + strandat 4255.507 kb on - strandat 4255.824 kb on - strand, within BWI76_RS20325at 4255.893 kb on - strand, within BWI76_RS20325at 4256.054 kb on + strand, within BWI76_RS20325at 4256.074 kb on + strand, within BWI76_RS20325at 4256.271 kb on + strandat 4256.302 kb on - strandat 4256.322 kb on - strandat 4256.360 kb on + strand, within BWI76_RS20330at 4256.425 kb on - strand, within BWI76_RS20330at 4256.449 kb on + strand, within BWI76_RS20330

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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4,254,107 + BWI76_RS20310 0.88 +0.2
4,254,107 - BWI76_RS20310 0.88 +0.1
4,254,115 - BWI76_RS20310 0.89 -1.6
4,254,122 + -0.6
4,254,354 + BWI76_RS20315 0.24 -0.1
4,254,505 - BWI76_RS20315 0.55 +0.1
4,254,561 + BWI76_RS20315 0.66 +0.4
4,254,777 - +1.4
4,255,231 + BWI76_RS20320 0.59 +1.4
4,255,312 - BWI76_RS20320 0.70 +1.4
4,255,478 + +1.3
4,255,486 - +1.7
4,255,487 + +1.9
4,255,505 + +1.4
4,255,507 - +1.6
4,255,824 - BWI76_RS20325 0.38 +1.6
4,255,893 - BWI76_RS20325 0.47 +1.6
4,256,054 + BWI76_RS20325 0.70 +1.5
4,256,074 + BWI76_RS20325 0.73 +1.2
4,256,271 + +1.4
4,256,302 - +1.9
4,256,322 - -1.5
4,256,360 + BWI76_RS20330 0.14 +1.2
4,256,425 - BWI76_RS20330 0.23 +1.0
4,256,449 + BWI76_RS20330 0.27 -2.0

Or see this region's nucleotide sequence