Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00400

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00390 and BWI76_RS00395 overlap by 49 nucleotidesBWI76_RS00395 and BWI76_RS00400 are separated by 57 nucleotidesBWI76_RS00400 and BWI76_RS00405 are separated by 215 nucleotidesBWI76_RS00405 and BWI76_RS00410 overlap by 48 nucleotides BWI76_RS00390: BWI76_RS00390 - two-component system sensor histidine kinase NtrB, at 82,296 to 83,345 _RS00390 BWI76_RS00395: BWI76_RS00395 - hypothetical protein, at 83,297 to 83,476 _RS00395 BWI76_RS00400: BWI76_RS00400 - glutamine synthetase, at 83,534 to 84,943 _RS00400 BWI76_RS00405: BWI76_RS00405 - hypothetical protein, at 85,159 to 85,369 _RS00405 BWI76_RS00410: BWI76_RS00410 - translational GTPase TypA, at 85,322 to 87,145 _RS00410 Position (kb) 83 84 85Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 82.861 kb on + strand, within BWI76_RS00390at 82.889 kb on + strand, within BWI76_RS00390at 83.033 kb on + strand, within BWI76_RS00390at 83.040 kb on + strand, within BWI76_RS00390at 83.142 kb on + strand, within BWI76_RS00390at 83.186 kb on - strand, within BWI76_RS00390at 83.302 kb on + strandat 83.501 kb on - strandat 83.508 kb on - strandat 83.541 kb on + strandat 83.636 kb on + strandat 83.695 kb on + strand, within BWI76_RS00400at 83.819 kb on - strand, within BWI76_RS00400at 84.616 kb on + strand, within BWI76_RS00400at 84.953 kb on + strandat 84.961 kb on - strandat 85.041 kb on - strandat 85.289 kb on - strand, within BWI76_RS00405

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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82,861 + BWI76_RS00390 0.54 -5.9
82,889 + BWI76_RS00390 0.56 -4.3
83,033 + BWI76_RS00390 0.70 -0.6
83,040 + BWI76_RS00390 0.71 -2.8
83,142 + BWI76_RS00390 0.81 -6.1
83,186 - BWI76_RS00390 0.85 -2.5
83,302 + -4.8
83,501 - -3.4
83,508 - -3.2
83,541 + -1.7
83,636 + -1.8
83,695 + BWI76_RS00400 0.11 -0.8
83,819 - BWI76_RS00400 0.20 -2.0
84,616 + BWI76_RS00400 0.77 -3.0
84,953 + -3.0
84,961 - -4.8
85,041 - -3.5
85,289 - BWI76_RS00405 0.62 +1.4

Or see this region's nucleotide sequence