Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3185

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3183 and DvMF_3184 are separated by 302 nucleotidesDvMF_3184 and DvMF_3185 are separated by 93 nucleotidesDvMF_3185 and DvMF_3186 overlap by 8 nucleotides DvMF_3183: DvMF_3183 - transcriptional regulator, TraR/DksA family (RefSeq), at 4,015,320 to 4,015,544 _3183 DvMF_3184: DvMF_3184 - Cupin 2 conserved barrel domain protein (RefSeq), at 4,015,847 to 4,016,251 _3184 DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355 _3185 DvMF_3186: DvMF_3186 - protein of unknown function DUF47 (RefSeq), at 4,017,348 to 4,017,977 _3186 Position (kb) 4016 4017 4018Strain fitness (log2 ratio) -2 -1 0 1at 4015.379 kb on - strand, within DvMF_3183at 4015.421 kb on - strand, within DvMF_3183at 4015.505 kb on + strand, within DvMF_3183at 4015.561 kb on + strandat 4015.977 kb on + strand, within DvMF_3184at 4016.052 kb on + strand, within DvMF_3184at 4016.312 kb on - strandat 4016.328 kb on + strandat 4016.490 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.687 kb on - strand, within DvMF_3185at 4016.984 kb on + strand, within DvMF_3185at 4016.993 kb on + strand, within DvMF_3185at 4017.041 kb on + strand, within DvMF_3185at 4017.092 kb on - strand, within DvMF_3185at 4017.538 kb on + strand, within DvMF_3186at 4017.547 kb on + strand, within DvMF_3186at 4017.547 kb on + strand, within DvMF_3186at 4017.586 kb on + strand, within DvMF_3186at 4017.747 kb on - strand, within DvMF_3186at 4017.966 kb on + strandat 4017.966 kb on + strandat 4017.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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4,015,379 - DvMF_3183 0.26 +0.6
4,015,421 - DvMF_3183 0.45 +1.3
4,015,505 + DvMF_3183 0.82 +0.4
4,015,561 + +0.5
4,015,977 + DvMF_3184 0.32 +1.4
4,016,052 + DvMF_3184 0.51 +1.3
4,016,312 - +0.4
4,016,328 + +0.2
4,016,490 - DvMF_3185 0.14 -0.7
4,016,687 - DvMF_3185 0.34 +0.6
4,016,687 - DvMF_3185 0.34 -2.0
4,016,984 + DvMF_3185 0.63 -1.4
4,016,993 + DvMF_3185 0.64 -1.4
4,017,041 + DvMF_3185 0.69 -2.0
4,017,092 - DvMF_3185 0.74 +0.4
4,017,538 + DvMF_3186 0.30 +0.6
4,017,547 + DvMF_3186 0.32 -0.8
4,017,547 + DvMF_3186 0.32 -0.4
4,017,586 + DvMF_3186 0.38 +0.6
4,017,747 - DvMF_3186 0.63 +0.6
4,017,966 + -0.7
4,017,966 + +0.6
4,017,974 - -2.2

Or see this region's nucleotide sequence