Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3183 and DvMF_3184 are separated by 302 nucleotides DvMF_3184 and DvMF_3185 are separated by 93 nucleotides DvMF_3185 and DvMF_3186 overlap by 8 nucleotides
DvMF_3183: DvMF_3183 - transcriptional regulator, TraR/DksA family (RefSeq), at 4,015,320 to 4,015,544
_3183
DvMF_3184: DvMF_3184 - Cupin 2 conserved barrel domain protein (RefSeq), at 4,015,847 to 4,016,251
_3184
DvMF_3185: DvMF_3185 - phosphate transporter (RefSeq), at 4,016,345 to 4,017,355
_3185
DvMF_3186: DvMF_3186 - protein of unknown function DUF47 (RefSeq), at 4,017,348 to 4,017,977
_3186
Position (kb)
4016
4017
4018 Strain fitness (log2 ratio)
-2
-1
0
1 at 4015.379 kb on - strand, within DvMF_3183 at 4015.421 kb on - strand, within DvMF_3183 at 4015.505 kb on + strand, within DvMF_3183 at 4015.561 kb on + strand at 4015.977 kb on + strand, within DvMF_3184 at 4016.052 kb on + strand, within DvMF_3184 at 4016.312 kb on - strand at 4016.328 kb on + strand at 4016.490 kb on - strand, within DvMF_3185 at 4016.687 kb on - strand, within DvMF_3185 at 4016.687 kb on - strand, within DvMF_3185 at 4016.984 kb on + strand, within DvMF_3185 at 4016.993 kb on + strand, within DvMF_3185 at 4017.041 kb on + strand, within DvMF_3185 at 4017.092 kb on - strand, within DvMF_3185 at 4017.538 kb on + strand, within DvMF_3186 at 4017.547 kb on + strand, within DvMF_3186 at 4017.547 kb on + strand, within DvMF_3186 at 4017.586 kb on + strand, within DvMF_3186 at 4017.747 kb on - strand, within DvMF_3186 at 4017.966 kb on + strand at 4017.966 kb on + strand at 4017.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 4,015,379 - DvMF_3183 0.26 +0.6 4,015,421 - DvMF_3183 0.45 +1.3 4,015,505 + DvMF_3183 0.82 +0.4 4,015,561 + +0.5 4,015,977 + DvMF_3184 0.32 +1.4 4,016,052 + DvMF_3184 0.51 +1.3 4,016,312 - +0.4 4,016,328 + +0.2 4,016,490 - DvMF_3185 0.14 -0.7 4,016,687 - DvMF_3185 0.34 +0.6 4,016,687 - DvMF_3185 0.34 -2.0 4,016,984 + DvMF_3185 0.63 -1.4 4,016,993 + DvMF_3185 0.64 -1.4 4,017,041 + DvMF_3185 0.69 -2.0 4,017,092 - DvMF_3185 0.74 +0.4 4,017,538 + DvMF_3186 0.30 +0.6 4,017,547 + DvMF_3186 0.32 -0.8 4,017,547 + DvMF_3186 0.32 -0.4 4,017,586 + DvMF_3186 0.38 +0.6 4,017,747 - DvMF_3186 0.63 +0.6 4,017,966 + -0.7 4,017,966 + +0.6 4,017,974 - -2.2
Or see this region's nucleotide sequence