Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3176

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3175 and DvMF_3176 are separated by 294 nucleotidesDvMF_3176 and DvMF_3177 are separated by 195 nucleotides DvMF_3175: DvMF_3175 - Rubrerythrin (RefSeq), at 4,004,729 to 4,005,223 _3175 DvMF_3176: DvMF_3176 - DNA topoisomerase III (RefSeq), at 4,005,518 to 4,008,139 _3176 DvMF_3177: DvMF_3177 - protein of unknown function UPF0029 (RefSeq), at 4,008,335 to 4,009,159 _3177 Position (kb) 4005 4006 4007 4008 4009Strain fitness (log2 ratio) -1 0 1at 4004.673 kb on + strandat 4004.885 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.909 kb on - strand, within DvMF_3175at 4004.911 kb on + strand, within DvMF_3175at 4005.414 kb on + strandat 4005.431 kb on + strandat 4005.833 kb on + strand, within DvMF_3176at 4005.839 kb on + strand, within DvMF_3176at 4005.841 kb on - strand, within DvMF_3176at 4005.947 kb on - strand, within DvMF_3176at 4006.107 kb on + strand, within DvMF_3176at 4006.253 kb on + strand, within DvMF_3176at 4006.356 kb on - strand, within DvMF_3176at 4006.361 kb on - strand, within DvMF_3176at 4006.375 kb on - strand, within DvMF_3176at 4006.559 kb on + strand, within DvMF_3176at 4006.594 kb on + strand, within DvMF_3176at 4006.636 kb on - strand, within DvMF_3176at 4006.653 kb on + strand, within DvMF_3176at 4006.687 kb on - strand, within DvMF_3176at 4007.003 kb on - strand, within DvMF_3176at 4007.118 kb on - strand, within DvMF_3176at 4007.272 kb on - strand, within DvMF_3176at 4007.459 kb on - strand, within DvMF_3176at 4007.479 kb on - strand, within DvMF_3176at 4007.551 kb on + strand, within DvMF_3176at 4007.559 kb on - strand, within DvMF_3176at 4007.640 kb on + strand, within DvMF_3176at 4007.972 kb on - strandat 4008.161 kb on - strandat 4008.167 kb on + strandat 4008.278 kb on + strandat 4008.440 kb on + strand, within DvMF_3177at 4009.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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4,004,673 + +0.9
4,004,885 - DvMF_3175 0.32 -0.1
4,004,909 - DvMF_3175 0.36 +0.4
4,004,909 - DvMF_3175 0.36 +0.3
4,004,911 + DvMF_3175 0.37 +0.0
4,005,414 + +0.6
4,005,431 + +0.3
4,005,833 + DvMF_3176 0.12 +0.2
4,005,839 + DvMF_3176 0.12 +0.5
4,005,841 - DvMF_3176 0.12 -0.0
4,005,947 - DvMF_3176 0.16 -0.5
4,006,107 + DvMF_3176 0.22 +0.7
4,006,253 + DvMF_3176 0.28 +1.1
4,006,356 - DvMF_3176 0.32 +0.6
4,006,361 - DvMF_3176 0.32 +0.9
4,006,375 - DvMF_3176 0.33 -0.5
4,006,559 + DvMF_3176 0.40 +0.7
4,006,594 + DvMF_3176 0.41 +0.8
4,006,636 - DvMF_3176 0.43 -0.1
4,006,653 + DvMF_3176 0.43 +1.1
4,006,687 - DvMF_3176 0.45 +0.1
4,007,003 - DvMF_3176 0.57 +1.0
4,007,118 - DvMF_3176 0.61 -0.8
4,007,272 - DvMF_3176 0.67 +0.6
4,007,459 - DvMF_3176 0.74 +0.0
4,007,479 - DvMF_3176 0.75 -0.1
4,007,551 + DvMF_3176 0.78 +0.4
4,007,559 - DvMF_3176 0.78 +1.4
4,007,640 + DvMF_3176 0.81 -0.4
4,007,972 - +0.4
4,008,161 - -0.0
4,008,167 + +0.7
4,008,278 + +0.5
4,008,440 + DvMF_3177 0.13 +0.6
4,009,129 + +0.1

Or see this region's nucleotide sequence