Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3175 and DvMF_3176 are separated by 294 nucleotides DvMF_3176 and DvMF_3177 are separated by 195 nucleotides
DvMF_3175: DvMF_3175 - Rubrerythrin (RefSeq), at 4,004,729 to 4,005,223
_3175
DvMF_3176: DvMF_3176 - DNA topoisomerase III (RefSeq), at 4,005,518 to 4,008,139
_3176
DvMF_3177: DvMF_3177 - protein of unknown function UPF0029 (RefSeq), at 4,008,335 to 4,009,159
_3177
Position (kb)
4005
4006
4007
4008
4009 Strain fitness (log2 ratio)
-1
0
1 at 4004.673 kb on + strand at 4004.885 kb on - strand, within DvMF_3175 at 4004.909 kb on - strand, within DvMF_3175 at 4004.909 kb on - strand, within DvMF_3175 at 4004.911 kb on + strand, within DvMF_3175 at 4005.414 kb on + strand at 4005.431 kb on + strand at 4005.833 kb on + strand, within DvMF_3176 at 4005.839 kb on + strand, within DvMF_3176 at 4005.841 kb on - strand, within DvMF_3176 at 4005.947 kb on - strand, within DvMF_3176 at 4006.107 kb on + strand, within DvMF_3176 at 4006.253 kb on + strand, within DvMF_3176 at 4006.356 kb on - strand, within DvMF_3176 at 4006.361 kb on - strand, within DvMF_3176 at 4006.375 kb on - strand, within DvMF_3176 at 4006.559 kb on + strand, within DvMF_3176 at 4006.594 kb on + strand, within DvMF_3176 at 4006.636 kb on - strand, within DvMF_3176 at 4006.653 kb on + strand, within DvMF_3176 at 4006.687 kb on - strand, within DvMF_3176 at 4007.003 kb on - strand, within DvMF_3176 at 4007.118 kb on - strand, within DvMF_3176 at 4007.272 kb on - strand, within DvMF_3176 at 4007.459 kb on - strand, within DvMF_3176 at 4007.479 kb on - strand, within DvMF_3176 at 4007.551 kb on + strand, within DvMF_3176 at 4007.559 kb on - strand, within DvMF_3176 at 4007.640 kb on + strand, within DvMF_3176 at 4007.972 kb on - strand at 4008.161 kb on - strand at 4008.167 kb on + strand at 4008.278 kb on + strand at 4008.440 kb on + strand, within DvMF_3177 at 4009.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 4,004,673 + +0.9 4,004,885 - DvMF_3175 0.32 -0.1 4,004,909 - DvMF_3175 0.36 +0.4 4,004,909 - DvMF_3175 0.36 +0.3 4,004,911 + DvMF_3175 0.37 +0.0 4,005,414 + +0.6 4,005,431 + +0.3 4,005,833 + DvMF_3176 0.12 +0.2 4,005,839 + DvMF_3176 0.12 +0.5 4,005,841 - DvMF_3176 0.12 -0.0 4,005,947 - DvMF_3176 0.16 -0.5 4,006,107 + DvMF_3176 0.22 +0.7 4,006,253 + DvMF_3176 0.28 +1.1 4,006,356 - DvMF_3176 0.32 +0.6 4,006,361 - DvMF_3176 0.32 +0.9 4,006,375 - DvMF_3176 0.33 -0.5 4,006,559 + DvMF_3176 0.40 +0.7 4,006,594 + DvMF_3176 0.41 +0.8 4,006,636 - DvMF_3176 0.43 -0.1 4,006,653 + DvMF_3176 0.43 +1.1 4,006,687 - DvMF_3176 0.45 +0.1 4,007,003 - DvMF_3176 0.57 +1.0 4,007,118 - DvMF_3176 0.61 -0.8 4,007,272 - DvMF_3176 0.67 +0.6 4,007,459 - DvMF_3176 0.74 +0.0 4,007,479 - DvMF_3176 0.75 -0.1 4,007,551 + DvMF_3176 0.78 +0.4 4,007,559 - DvMF_3176 0.78 +1.4 4,007,640 + DvMF_3176 0.81 -0.4 4,007,972 - +0.4 4,008,161 - -0.0 4,008,167 + +0.7 4,008,278 + +0.5 4,008,440 + DvMF_3177 0.13 +0.6 4,009,129 + +0.1
Or see this region's nucleotide sequence