Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2544 and DvMF_2545 are separated by 337 nucleotides DvMF_2545 and DvMF_2546 are separated by 269 nucleotides
DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506
_2544
DvMF_2545: DvMF_2545 - metal dependent phosphohydrolase (RefSeq), at 3,216,844 to 3,217,653
_2545
DvMF_2546: DvMF_2546 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,217,923 to 3,218,381
_2546
Position (kb)
3216
3217
3218 Strain fitness (log2 ratio)
-1
0
1 at 3215.898 kb on + strand, within DvMF_2544 at 3215.908 kb on + strand, within DvMF_2544 at 3216.155 kb on + strand, within DvMF_2544 at 3216.159 kb on - strand, within DvMF_2544 at 3216.160 kb on + strand, within DvMF_2544 at 3216.204 kb on - strand, within DvMF_2544 at 3216.213 kb on + strand, within DvMF_2544 at 3216.218 kb on + strand, within DvMF_2544 at 3216.221 kb on - strand, within DvMF_2544 at 3216.221 kb on - strand, within DvMF_2544 at 3216.226 kb on - strand, within DvMF_2544 at 3216.261 kb on + strand, within DvMF_2544 at 3216.358 kb on + strand at 3216.358 kb on + strand at 3216.402 kb on - strand at 3216.446 kb on - strand at 3216.565 kb on + strand at 3216.668 kb on + strand at 3216.874 kb on - strand at 3216.907 kb on + strand at 3216.930 kb on - strand, within DvMF_2545 at 3217.027 kb on + strand, within DvMF_2545 at 3217.103 kb on + strand, within DvMF_2545 at 3217.120 kb on + strand, within DvMF_2545 at 3217.120 kb on + strand, within DvMF_2545 at 3217.888 kb on - strand at 3217.969 kb on + strand, within DvMF_2546 at 3217.987 kb on - strand, within DvMF_2546 at 3218.227 kb on + strand, within DvMF_2546 at 3218.303 kb on + strand, within DvMF_2546 at 3218.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 3,215,898 + DvMF_2544 0.61 +0.6 3,215,908 + DvMF_2544 0.61 +0.2 3,216,155 + DvMF_2544 0.77 +0.4 3,216,159 - DvMF_2544 0.77 +0.6 3,216,160 + DvMF_2544 0.78 +1.2 3,216,204 - DvMF_2544 0.80 +1.6 3,216,213 + DvMF_2544 0.81 +0.2 3,216,218 + DvMF_2544 0.81 +0.5 3,216,221 - DvMF_2544 0.81 +0.1 3,216,221 - DvMF_2544 0.81 +0.5 3,216,226 - DvMF_2544 0.82 -0.1 3,216,261 + DvMF_2544 0.84 +0.1 3,216,358 + +0.6 3,216,358 + +0.1 3,216,402 - +0.6 3,216,446 - -0.0 3,216,565 + +0.8 3,216,668 + -0.3 3,216,874 - -0.1 3,216,907 + -0.2 3,216,930 - DvMF_2545 0.11 +0.3 3,217,027 + DvMF_2545 0.23 -0.7 3,217,103 + DvMF_2545 0.32 +0.7 3,217,120 + DvMF_2545 0.34 +0.2 3,217,120 + DvMF_2545 0.34 +0.8 3,217,888 - -0.2 3,217,969 + DvMF_2546 0.10 -0.5 3,217,987 - DvMF_2546 0.14 -0.5 3,218,227 + DvMF_2546 0.66 +0.0 3,218,303 + DvMF_2546 0.83 +0.5 3,218,338 - -0.3
Or see this region's nucleotide sequence