Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2378

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2377 and DvMF_2378 are separated by 605 nucleotidesDvMF_2378 and DvMF_2379 are separated by 311 nucleotides DvMF_2377: DvMF_2377 - Radical SAM domain protein (RefSeq), at 3,002,886 to 3,003,983 _2377 DvMF_2378: DvMF_2378 - tRNA (adenine-N(1)-)-methyltransferase (RefSeq), at 3,004,589 to 3,005,485 _2378 DvMF_2379: DvMF_2379 - ABC transporter related (RefSeq), at 3,005,797 to 3,007,779 _2379 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -1 0 1at 3003.593 kb on + strand, within DvMF_2377at 3003.632 kb on + strand, within DvMF_2377at 3003.689 kb on - strand, within DvMF_2377at 3003.917 kb on + strandat 3003.917 kb on + strandat 3004.187 kb on - strandat 3004.239 kb on + strandat 3004.247 kb on - strandat 3004.283 kb on - strandat 3004.306 kb on - strandat 3004.387 kb on + strandat 3004.669 kb on - strandat 3005.010 kb on + strand, within DvMF_2378at 3005.053 kb on + strand, within DvMF_2378at 3005.156 kb on + strand, within DvMF_2378at 3005.166 kb on + strand, within DvMF_2378at 3005.214 kb on + strand, within DvMF_2378at 3005.987 kb on - strandat 3006.028 kb on + strand, within DvMF_2379at 3006.171 kb on + strand, within DvMF_2379

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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3,003,593 + DvMF_2377 0.64 +0.1
3,003,632 + DvMF_2377 0.68 -0.1
3,003,689 - DvMF_2377 0.73 +0.4
3,003,917 + +0.3
3,003,917 + +0.1
3,004,187 - +0.3
3,004,239 + +0.0
3,004,247 - +0.6
3,004,283 - +0.9
3,004,306 - +1.3
3,004,387 + +0.6
3,004,669 - +0.4
3,005,010 + DvMF_2378 0.47 -0.2
3,005,053 + DvMF_2378 0.52 -0.2
3,005,156 + DvMF_2378 0.63 +0.9
3,005,166 + DvMF_2378 0.64 -0.0
3,005,214 + DvMF_2378 0.70 +0.1
3,005,987 - +0.1
3,006,028 + DvMF_2379 0.12 +0.1
3,006,171 + DvMF_2379 0.19 +0.1

Or see this region's nucleotide sequence