Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2332 and DvMF_2333 are separated by 436 nucleotides DvMF_2333 and DvMF_2334 overlap by 1 nucleotides DvMF_2334 and DvMF_2335 are separated by 219 nucleotides
DvMF_2332: DvMF_2332 - response regulator receiver protein (RefSeq), at 2,939,655 to 2,940,023
_2332
DvMF_2333: DvMF_2333 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,940,460 to 2,942,283
_2333
DvMF_2334: DvMF_2334 - response regulator receiver protein (RefSeq), at 2,942,283 to 2,942,738
_2334
DvMF_2335: DvMF_2335 - peptidase M50 (RefSeq), at 2,942,958 to 2,943,632
_2335
Position (kb)
2940
2941
2942
2943 Strain fitness (log2 ratio)
-1
0
1 at 2939.716 kb on - strand, within DvMF_2332 at 2939.883 kb on - strand, within DvMF_2332 at 2939.957 kb on + strand, within DvMF_2332 at 2939.987 kb on + strand at 2940.446 kb on + strand at 2940.579 kb on + strand at 2940.797 kb on - strand, within DvMF_2333 at 2940.808 kb on + strand, within DvMF_2333 at 2940.819 kb on + strand, within DvMF_2333 at 2940.898 kb on + strand, within DvMF_2333 at 2941.180 kb on + strand, within DvMF_2333 at 2941.188 kb on - strand, within DvMF_2333 at 2941.247 kb on + strand, within DvMF_2333 at 2941.300 kb on + strand, within DvMF_2333 at 2941.652 kb on + strand, within DvMF_2333 at 2941.772 kb on + strand, within DvMF_2333 at 2941.863 kb on - strand, within DvMF_2333 at 2941.885 kb on - strand, within DvMF_2333 at 2941.950 kb on + strand, within DvMF_2333 at 2942.018 kb on + strand, within DvMF_2333 at 2942.026 kb on - strand, within DvMF_2333 at 2942.074 kb on - strand, within DvMF_2333 at 2942.305 kb on - strand at 2942.553 kb on - strand, within DvMF_2334 at 2942.698 kb on + strand at 2942.790 kb on + strand at 2942.812 kb on + strand at 2943.068 kb on - strand, within DvMF_2335 at 2943.246 kb on + strand, within DvMF_2335
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 2,939,716 - DvMF_2332 0.17 +1.5 2,939,883 - DvMF_2332 0.62 +0.9 2,939,957 + DvMF_2332 0.82 +0.7 2,939,987 + +0.9 2,940,446 + +0.5 2,940,579 + +0.1 2,940,797 - DvMF_2333 0.18 +0.9 2,940,808 + DvMF_2333 0.19 -0.1 2,940,819 + DvMF_2333 0.20 +0.6 2,940,898 + DvMF_2333 0.24 +0.7 2,941,180 + DvMF_2333 0.39 -0.2 2,941,188 - DvMF_2333 0.40 -0.6 2,941,247 + DvMF_2333 0.43 -0.2 2,941,300 + DvMF_2333 0.46 +1.0 2,941,652 + DvMF_2333 0.65 +0.4 2,941,772 + DvMF_2333 0.72 +0.7 2,941,863 - DvMF_2333 0.77 +0.2 2,941,885 - DvMF_2333 0.78 -0.8 2,941,950 + DvMF_2333 0.82 +0.1 2,942,018 + DvMF_2333 0.85 +0.5 2,942,026 - DvMF_2333 0.86 +0.3 2,942,074 - DvMF_2333 0.88 +0.2 2,942,305 - +0.4 2,942,553 - DvMF_2334 0.59 +0.2 2,942,698 + +0.0 2,942,790 + +0.2 2,942,812 + +0.6 2,943,068 - DvMF_2335 0.16 -0.3 2,943,246 + DvMF_2335 0.43 +1.0
Or see this region's nucleotide sequence