Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2333

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2332 and DvMF_2333 are separated by 436 nucleotidesDvMF_2333 and DvMF_2334 overlap by 1 nucleotidesDvMF_2334 and DvMF_2335 are separated by 219 nucleotides DvMF_2332: DvMF_2332 - response regulator receiver protein (RefSeq), at 2,939,655 to 2,940,023 _2332 DvMF_2333: DvMF_2333 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,940,460 to 2,942,283 _2333 DvMF_2334: DvMF_2334 - response regulator receiver protein (RefSeq), at 2,942,283 to 2,942,738 _2334 DvMF_2335: DvMF_2335 - peptidase M50 (RefSeq), at 2,942,958 to 2,943,632 _2335 Position (kb) 2940 2941 2942 2943Strain fitness (log2 ratio) -1 0 1at 2939.716 kb on - strand, within DvMF_2332at 2939.883 kb on - strand, within DvMF_2332at 2939.957 kb on + strand, within DvMF_2332at 2939.987 kb on + strandat 2940.446 kb on + strandat 2940.579 kb on + strandat 2940.797 kb on - strand, within DvMF_2333at 2940.808 kb on + strand, within DvMF_2333at 2940.819 kb on + strand, within DvMF_2333at 2940.898 kb on + strand, within DvMF_2333at 2941.180 kb on + strand, within DvMF_2333at 2941.188 kb on - strand, within DvMF_2333at 2941.247 kb on + strand, within DvMF_2333at 2941.300 kb on + strand, within DvMF_2333at 2941.652 kb on + strand, within DvMF_2333at 2941.772 kb on + strand, within DvMF_2333at 2941.863 kb on - strand, within DvMF_2333at 2941.885 kb on - strand, within DvMF_2333at 2941.950 kb on + strand, within DvMF_2333at 2942.018 kb on + strand, within DvMF_2333at 2942.026 kb on - strand, within DvMF_2333at 2942.074 kb on - strand, within DvMF_2333at 2942.305 kb on - strandat 2942.553 kb on - strand, within DvMF_2334at 2942.698 kb on + strandat 2942.790 kb on + strandat 2942.812 kb on + strandat 2943.068 kb on - strand, within DvMF_2335at 2943.246 kb on + strand, within DvMF_2335

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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2,939,716 - DvMF_2332 0.17 +1.5
2,939,883 - DvMF_2332 0.62 +0.9
2,939,957 + DvMF_2332 0.82 +0.7
2,939,987 + +0.9
2,940,446 + +0.5
2,940,579 + +0.1
2,940,797 - DvMF_2333 0.18 +0.9
2,940,808 + DvMF_2333 0.19 -0.1
2,940,819 + DvMF_2333 0.20 +0.6
2,940,898 + DvMF_2333 0.24 +0.7
2,941,180 + DvMF_2333 0.39 -0.2
2,941,188 - DvMF_2333 0.40 -0.6
2,941,247 + DvMF_2333 0.43 -0.2
2,941,300 + DvMF_2333 0.46 +1.0
2,941,652 + DvMF_2333 0.65 +0.4
2,941,772 + DvMF_2333 0.72 +0.7
2,941,863 - DvMF_2333 0.77 +0.2
2,941,885 - DvMF_2333 0.78 -0.8
2,941,950 + DvMF_2333 0.82 +0.1
2,942,018 + DvMF_2333 0.85 +0.5
2,942,026 - DvMF_2333 0.86 +0.3
2,942,074 - DvMF_2333 0.88 +0.2
2,942,305 - +0.4
2,942,553 - DvMF_2334 0.59 +0.2
2,942,698 + +0.0
2,942,790 + +0.2
2,942,812 + +0.6
2,943,068 - DvMF_2335 0.16 -0.3
2,943,246 + DvMF_2335 0.43 +1.0

Or see this region's nucleotide sequence