Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2002

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2001 and DvMF_2002 are separated by 63 nucleotidesDvMF_2002 and DvMF_2003 are separated by 366 nucleotides DvMF_2001: DvMF_2001 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,480,360 to 2,481,904 _2001 DvMF_2002: DvMF_2002 - hypothetical protein (RefSeq), at 2,481,968 to 2,482,930 _2002 DvMF_2003: DvMF_2003 - Altronate dehydratase (RefSeq), at 2,483,297 to 2,484,460 _2003 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -1 0 1at 2481.220 kb on - strand, within DvMF_2001at 2481.256 kb on + strand, within DvMF_2001at 2481.516 kb on + strand, within DvMF_2001at 2481.576 kb on - strand, within DvMF_2001at 2481.678 kb on + strand, within DvMF_2001at 2481.914 kb on + strandat 2482.161 kb on + strand, within DvMF_2002at 2482.198 kb on + strand, within DvMF_2002at 2482.209 kb on - strand, within DvMF_2002at 2482.371 kb on + strand, within DvMF_2002at 2482.382 kb on - strand, within DvMF_2002at 2482.440 kb on + strand, within DvMF_2002at 2482.462 kb on - strand, within DvMF_2002at 2482.472 kb on - strand, within DvMF_2002at 2482.584 kb on - strand, within DvMF_2002at 2482.666 kb on - strand, within DvMF_2002at 2482.815 kb on + strand, within DvMF_2002at 2482.870 kb on + strandat 2482.956 kb on + strandat 2482.964 kb on - strandat 2482.966 kb on + strandat 2483.172 kb on - strandat 2483.194 kb on - strandat 2483.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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2,481,220 - DvMF_2001 0.56 +0.6
2,481,256 + DvMF_2001 0.58 +0.1
2,481,516 + DvMF_2001 0.75 +1.5
2,481,576 - DvMF_2001 0.79 +0.9
2,481,678 + DvMF_2001 0.85 +0.6
2,481,914 + +0.3
2,482,161 + DvMF_2002 0.20 -0.4
2,482,198 + DvMF_2002 0.24 -0.6
2,482,209 - DvMF_2002 0.25 +0.4
2,482,371 + DvMF_2002 0.42 +1.0
2,482,382 - DvMF_2002 0.43 +0.5
2,482,440 + DvMF_2002 0.49 +0.3
2,482,462 - DvMF_2002 0.51 -0.1
2,482,472 - DvMF_2002 0.52 +0.6
2,482,584 - DvMF_2002 0.64 +0.8
2,482,666 - DvMF_2002 0.72 +0.7
2,482,815 + DvMF_2002 0.88 +0.2
2,482,870 + +0.8
2,482,956 + +0.9
2,482,964 - +0.6
2,482,966 + -0.1
2,483,172 - +0.4
2,483,194 - +0.6
2,483,271 - +0.8

Or see this region's nucleotide sequence