Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1880 and DvMF_1881 are separated by 195 nucleotides DvMF_1881 and DvMF_1882 are separated by 267 nucleotides DvMF_1882 and DvMF_1883 overlap by 8 nucleotides
DvMF_1880: DvMF_1880 - outer membrane autotransporter barrel domain protein (RefSeq), at 2,312,841 to 2,315,651
_1880
DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625
_1881
DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258
_1882
DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098
_1883
Position (kb)
2315
2316
2317
2318 Strain fitness (log2 ratio)
-2
-1
0
1 at 2314.952 kb on + strand, within DvMF_1880 at 2315.031 kb on + strand, within DvMF_1880 at 2315.081 kb on + strand, within DvMF_1880 at 2315.102 kb on + strand, within DvMF_1880 at 2315.147 kb on + strand, within DvMF_1880 at 2315.199 kb on + strand, within DvMF_1880 at 2315.336 kb on - strand, within DvMF_1880 at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.591 kb on + strand at 2315.739 kb on + strand at 2316.249 kb on + strand, within DvMF_1881 at 2316.257 kb on - strand, within DvMF_1881 at 2316.529 kb on - strand, within DvMF_1881 at 2316.565 kb on + strand, within DvMF_1881 at 2316.879 kb on - strand, within DvMF_1881 at 2317.326 kb on + strand, within DvMF_1881 at 2317.336 kb on - strand, within DvMF_1881 at 2317.584 kb on - strand at 2317.944 kb on + strand, within DvMF_1882 at 2318.170 kb on + strand, within DvMF_1882 at 2318.436 kb on - strand, within DvMF_1883 at 2318.519 kb on - strand, within DvMF_1883 at 2318.558 kb on + strand, within DvMF_1883 at 2318.561 kb on - strand, within DvMF_1883 at 2318.566 kb on - strand, within DvMF_1883 at 2318.579 kb on + strand, within DvMF_1883
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 2,314,952 + DvMF_1880 0.75 +0.3 2,315,031 + DvMF_1880 0.78 +0.7 2,315,081 + DvMF_1880 0.80 +0.3 2,315,102 + DvMF_1880 0.80 +0.3 2,315,147 + DvMF_1880 0.82 +0.3 2,315,199 + DvMF_1880 0.84 +0.2 2,315,336 - DvMF_1880 0.89 +0.6 2,315,591 + +0.1 2,315,591 + +0.4 2,315,591 + +0.5 2,315,739 + +0.7 2,316,249 + DvMF_1881 0.23 +0.4 2,316,257 - DvMF_1881 0.23 +0.0 2,316,529 - DvMF_1881 0.38 +0.6 2,316,565 + DvMF_1881 0.40 +0.5 2,316,879 - DvMF_1881 0.58 +0.4 2,317,326 + DvMF_1881 0.83 +1.2 2,317,336 - DvMF_1881 0.84 +0.6 2,317,584 - +0.3 2,317,944 + DvMF_1882 0.14 -2.2 2,318,170 + DvMF_1882 0.76 -1.7 2,318,436 - DvMF_1883 0.10 -2.2 2,318,519 - DvMF_1883 0.15 -1.6 2,318,558 + DvMF_1883 0.17 -2.1 2,318,561 - DvMF_1883 0.17 -0.2 2,318,566 - DvMF_1883 0.17 -1.2 2,318,579 + DvMF_1883 0.18 -2.2
Or see this region's nucleotide sequence