Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1494

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1493 and DvMF_1494 are separated by 736 nucleotidesDvMF_1494 and DvMF_1495 are separated by 618 nucleotides DvMF_1493: DvMF_1493 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,833,593 to 1,835,533 _1493 DvMF_1494: DvMF_1494 - type I secretion outer membrane protein, TolC family (RefSeq), at 1,836,270 to 1,837,622 _1494 DvMF_1495: DvMF_1495 - von Willebrand factor type A (RefSeq), at 1,838,241 to 1,845,677 _1495 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -1 0 1 2 3at 1835.333 kb on + strand, within DvMF_1493at 1835.352 kb on - strandat 1836.257 kb on + strandat 1836.327 kb on + strandat 1836.416 kb on + strand, within DvMF_1494at 1836.490 kb on + strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.498 kb on - strand, within DvMF_1494at 1836.532 kb on - strand, within DvMF_1494at 1836.700 kb on + strand, within DvMF_1494at 1836.728 kb on + strand, within DvMF_1494at 1836.986 kb on + strand, within DvMF_1494at 1836.996 kb on + strand, within DvMF_1494at 1837.211 kb on - strand, within DvMF_1494at 1837.397 kb on - strand, within DvMF_1494at 1837.732 kb on + strandat 1837.818 kb on + strandat 1837.902 kb on - strandat 1837.921 kb on + strandat 1837.929 kb on - strandat 1837.950 kb on + strandat 1838.074 kb on - strandat 1838.122 kb on + strandat 1838.207 kb on + strandat 1838.314 kb on - strandat 1838.349 kb on - strandat 1838.364 kb on - strandat 1838.414 kb on + strandat 1838.575 kb on - strandat 1838.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,835,333 + DvMF_1493 0.90 +0.6
1,835,352 - +0.2
1,836,257 + +0.6
1,836,327 + +1.4
1,836,416 + DvMF_1494 0.11 +1.4
1,836,490 + DvMF_1494 0.16 +1.3
1,836,498 - DvMF_1494 0.17 +1.3
1,836,498 - DvMF_1494 0.17 +1.2
1,836,498 - DvMF_1494 0.17 +3.0
1,836,532 - DvMF_1494 0.19 +1.6
1,836,700 + DvMF_1494 0.32 +1.4
1,836,728 + DvMF_1494 0.34 +1.3
1,836,986 + DvMF_1494 0.53 +1.1
1,836,996 + DvMF_1494 0.54 +1.3
1,837,211 - DvMF_1494 0.70 +0.9
1,837,397 - DvMF_1494 0.83 +1.7
1,837,732 + +0.6
1,837,818 + +0.4
1,837,902 - +0.5
1,837,921 + +0.5
1,837,929 - +0.5
1,837,950 + +0.2
1,838,074 - +0.4
1,838,122 + +0.6
1,838,207 + +0.5
1,838,314 - +0.6
1,838,349 - +2.1
1,838,364 - +1.6
1,838,414 + +2.2
1,838,575 - +2.4
1,838,599 - +1.1

Or see this region's nucleotide sequence