Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1458

Experiment: 7 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1457 and DvMF_1458 are separated by 14 nucleotidesDvMF_1458 and DvMF_1459 are separated by 85 nucleotides DvMF_1457: DvMF_1457 - hypothetical protein (RefSeq), at 1,784,883 to 1,785,560 _1457 DvMF_1458: DvMF_1458 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,785,575 to 1,788,112 _1458 DvMF_1459: DvMF_1459 - domain of unknown function DUF1731 (RefSeq), at 1,788,198 to 1,789,154 _1459 Position (kb) 1785 1786 1787 1788 1789Strain fitness (log2 ratio) -3 -2 -1 0 1at 1784.970 kb on + strand, within DvMF_1457at 1785.118 kb on + strand, within DvMF_1457at 1785.232 kb on - strand, within DvMF_1457at 1785.739 kb on - strandat 1785.846 kb on + strand, within DvMF_1458at 1786.024 kb on - strand, within DvMF_1458at 1786.148 kb on - strand, within DvMF_1458at 1786.283 kb on + strand, within DvMF_1458at 1786.399 kb on - strand, within DvMF_1458at 1787.201 kb on + strand, within DvMF_1458at 1787.708 kb on + strand, within DvMF_1458at 1787.724 kb on + strand, within DvMF_1458at 1787.830 kb on - strand, within DvMF_1458at 1787.872 kb on + strandat 1787.994 kb on - strandat 1788.260 kb on + strandat 1788.696 kb on + strand, within DvMF_1459at 1788.709 kb on - strand, within DvMF_1459at 1788.709 kb on - strand, within DvMF_1459at 1789.006 kb on + strand, within DvMF_1459

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
remove
1,784,970 + DvMF_1457 0.13 -0.1
1,785,118 + DvMF_1457 0.35 +1.3
1,785,232 - DvMF_1457 0.51 -0.9
1,785,739 - -1.5
1,785,846 + DvMF_1458 0.11 -1.7
1,786,024 - DvMF_1458 0.18 -1.9
1,786,148 - DvMF_1458 0.23 -3.3
1,786,283 + DvMF_1458 0.28 -2.4
1,786,399 - DvMF_1458 0.32 -1.9
1,787,201 + DvMF_1458 0.64 -0.3
1,787,708 + DvMF_1458 0.84 -0.9
1,787,724 + DvMF_1458 0.85 -2.0
1,787,830 - DvMF_1458 0.89 -2.3
1,787,872 + -1.9
1,787,994 - -1.3
1,788,260 + +0.2
1,788,696 + DvMF_1459 0.52 +0.6
1,788,709 - DvMF_1459 0.53 +0.5
1,788,709 - DvMF_1459 0.53 +1.1
1,789,006 + DvMF_1459 0.84 +0.7

Or see this region's nucleotide sequence