Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1339

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1338 and DvMF_1339 are separated by 186 nucleotidesDvMF_1339 and DvMF_1340 are separated by 181 nucleotidesDvMF_1340 and DvMF_1341 are separated by 141 nucleotides DvMF_1338: DvMF_1338 - metal dependent phosphohydrolase (RefSeq), at 1,632,955 to 1,634,310 _1338 DvMF_1339: DvMF_1339 - molybdenum cofactor synthesis domain protein (RefSeq), at 1,634,497 to 1,635,312 _1339 DvMF_1340: DvMF_1340 - hypothetical protein (RefSeq), at 1,635,494 to 1,635,907 _1340 DvMF_1341: DvMF_1341 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,636,049 to 1,636,786 _1341 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1at 1633.547 kb on + strand, within DvMF_1338at 1633.548 kb on - strand, within DvMF_1338at 1633.628 kb on + strand, within DvMF_1338at 1633.827 kb on - strand, within DvMF_1338at 1634.073 kb on + strand, within DvMF_1338at 1634.180 kb on - strandat 1634.608 kb on + strand, within DvMF_1339at 1635.161 kb on - strand, within DvMF_1339at 1635.195 kb on - strand, within DvMF_1339at 1635.422 kb on + strandat 1635.595 kb on + strand, within DvMF_1340at 1635.676 kb on + strand, within DvMF_1340at 1635.684 kb on - strand, within DvMF_1340at 1636.017 kb on + strandat 1636.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,633,547 + DvMF_1338 0.44 +0.4
1,633,548 - DvMF_1338 0.44 +1.2
1,633,628 + DvMF_1338 0.50 -0.0
1,633,827 - DvMF_1338 0.64 +0.1
1,634,073 + DvMF_1338 0.82 +0.4
1,634,180 - +0.5
1,634,608 + DvMF_1339 0.14 -3.5
1,635,161 - DvMF_1339 0.81 -2.9
1,635,195 - DvMF_1339 0.86 +0.6
1,635,422 + +0.4
1,635,595 + DvMF_1340 0.24 -0.3
1,635,676 + DvMF_1340 0.44 -0.4
1,635,684 - DvMF_1340 0.46 +0.1
1,636,017 + +0.0
1,636,119 - +0.7

Or see this region's nucleotide sequence