Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1230 and DvMF_1231 are separated by 125 nucleotides DvMF_1231 and DvMF_1232 overlap by 4 nucleotides DvMF_1232 and DvMF_1233 overlap by 1 nucleotides
DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405
_1230
DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403
_1231
DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224
_1232
DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135
_1233
Position (kb)
1520
1521
1522 Strain fitness (log2 ratio)
-1
0
1 at 1519.855 kb on + strand, within DvMF_1231 at 1519.999 kb on + strand, within DvMF_1231 at 1520.331 kb on - strand at 1520.494 kb on - strand, within DvMF_1232 at 1520.689 kb on - strand, within DvMF_1232 at 1520.762 kb on - strand, within DvMF_1232 at 1520.969 kb on + strand, within DvMF_1232 at 1521.041 kb on - strand, within DvMF_1232 at 1521.238 kb on - strand at 1521.356 kb on + strand, within DvMF_1233 at 1521.512 kb on - strand, within DvMF_1233 at 1521.681 kb on - strand, within DvMF_1233 at 1521.751 kb on - strand, within DvMF_1233 at 1521.803 kb on - strand, within DvMF_1233 at 1521.846 kb on - strand, within DvMF_1233 at 1522.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 1,519,855 + DvMF_1231 0.37 -1.6 1,519,999 + DvMF_1231 0.54 -0.9 1,520,331 - +0.6 1,520,494 - DvMF_1232 0.11 +0.5 1,520,689 - DvMF_1232 0.35 +0.2 1,520,762 - DvMF_1232 0.44 +0.8 1,520,969 + DvMF_1232 0.69 -0.7 1,521,041 - DvMF_1232 0.78 +0.7 1,521,238 - +0.9 1,521,356 + DvMF_1233 0.14 +0.9 1,521,512 - DvMF_1233 0.32 +0.6 1,521,681 - DvMF_1233 0.50 +0.3 1,521,751 - DvMF_1233 0.58 +0.7 1,521,803 - DvMF_1233 0.63 +0.6 1,521,846 - DvMF_1233 0.68 +0.6 1,522,071 + -0.0
Or see this region's nucleotide sequence