Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1161

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1161 and DvMF_1162 are separated by 119 nucleotidesDvMF_1162 and DvMF_1163 overlap by 1 nucleotides DvMF_1161: DvMF_1161 - Hemolysin-type calcium-binding region (RefSeq), at 1,429,589 to 1,437,202 _1161 DvMF_1162: DvMF_1162 - ABC transporter related (RefSeq), at 1,437,322 to 1,438,047 _1162 DvMF_1163: DvMF_1163 - ABC transporter related (RefSeq), at 1,438,047 to 1,438,814 _1163 Position (kb) 1429 1430 1431 1432 1433 1434 1435 1436 1437 1438Strain fitness (log2 ratio) -1 0 1 2at 1428.617 kb on - strandat 1428.837 kb on + strandat 1428.942 kb on + strandat 1429.191 kb on - strandat 1429.333 kb on + strandat 1429.500 kb on - strandat 1429.774 kb on - strandat 1430.151 kb on - strandat 1430.331 kb on + strandat 1430.467 kb on - strand, within DvMF_1161at 1430.496 kb on + strand, within DvMF_1161at 1430.504 kb on - strand, within DvMF_1161at 1430.504 kb on - strand, within DvMF_1161at 1430.566 kb on - strand, within DvMF_1161at 1430.605 kb on - strand, within DvMF_1161at 1430.700 kb on - strand, within DvMF_1161at 1430.725 kb on + strand, within DvMF_1161at 1430.906 kb on - strand, within DvMF_1161at 1430.938 kb on - strand, within DvMF_1161at 1431.072 kb on + strand, within DvMF_1161at 1431.192 kb on + strand, within DvMF_1161at 1431.200 kb on - strand, within DvMF_1161at 1431.407 kb on + strand, within DvMF_1161at 1431.482 kb on - strand, within DvMF_1161at 1431.538 kb on + strand, within DvMF_1161at 1431.546 kb on - strand, within DvMF_1161at 1431.563 kb on + strand, within DvMF_1161at 1431.607 kb on + strand, within DvMF_1161at 1431.629 kb on + strand, within DvMF_1161at 1431.673 kb on + strand, within DvMF_1161at 1431.860 kb on - strand, within DvMF_1161at 1431.874 kb on - strand, within DvMF_1161at 1431.958 kb on - strand, within DvMF_1161at 1432.045 kb on - strand, within DvMF_1161at 1432.403 kb on + strand, within DvMF_1161at 1432.469 kb on - strand, within DvMF_1161at 1432.587 kb on - strand, within DvMF_1161at 1432.603 kb on + strand, within DvMF_1161at 1432.757 kb on + strand, within DvMF_1161at 1432.951 kb on - strand, within DvMF_1161at 1433.101 kb on + strand, within DvMF_1161at 1433.542 kb on - strand, within DvMF_1161at 1433.570 kb on - strand, within DvMF_1161at 1433.725 kb on - strand, within DvMF_1161at 1433.886 kb on + strand, within DvMF_1161at 1433.886 kb on + strand, within DvMF_1161at 1433.886 kb on + strand, within DvMF_1161at 1433.894 kb on - strand, within DvMF_1161at 1433.894 kb on - strand, within DvMF_1161at 1433.894 kb on - strand, within DvMF_1161at 1433.894 kb on - strand, within DvMF_1161at 1434.025 kb on - strand, within DvMF_1161at 1434.035 kb on - strand, within DvMF_1161at 1434.434 kb on - strand, within DvMF_1161at 1434.523 kb on - strand, within DvMF_1161at 1434.534 kb on + strand, within DvMF_1161at 1434.547 kb on + strandat 1434.555 kb on - strand, within DvMF_1161at 1434.599 kb on - strand, within DvMF_1161at 1434.694 kb on + strand, within DvMF_1161at 1434.779 kb on - strand, within DvMF_1161at 1435.015 kb on - strand, within DvMF_1161at 1435.038 kb on + strand, within DvMF_1161at 1435.409 kb on - strand, within DvMF_1161at 1435.559 kb on - strand, within DvMF_1161at 1435.637 kb on - strand, within DvMF_1161at 1435.775 kb on + strand, within DvMF_1161at 1435.778 kb on - strand, within DvMF_1161at 1435.939 kb on - strand, within DvMF_1161at 1435.998 kb on - strand, within DvMF_1161at 1436.004 kb on + strand, within DvMF_1161at 1436.217 kb on - strand, within DvMF_1161at 1436.304 kb on - strand, within DvMF_1161at 1436.368 kb on - strand, within DvMF_1161at 1436.472 kb on - strandat 1436.703 kb on - strandat 1436.732 kb on - strandat 1437.209 kb on + strandat 1437.272 kb on + strandat 1437.335 kb on - strandat 1437.536 kb on + strand, within DvMF_1162at 1437.910 kb on + strand, within DvMF_1162

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,428,617 - +1.6
1,428,837 + +1.8
1,428,942 + +1.0
1,429,191 - -0.2
1,429,333 + +0.4
1,429,500 - -0.4
1,429,774 - +0.4
1,430,151 - +0.6
1,430,331 + +0.6
1,430,467 - DvMF_1161 0.12 +0.1
1,430,496 + DvMF_1161 0.12 +0.1
1,430,504 - DvMF_1161 0.12 +0.1
1,430,504 - DvMF_1161 0.12 +0.5
1,430,566 - DvMF_1161 0.13 +0.6
1,430,605 - DvMF_1161 0.13 +0.5
1,430,700 - DvMF_1161 0.15 +1.5
1,430,725 + DvMF_1161 0.15 +1.7
1,430,906 - DvMF_1161 0.17 +0.8
1,430,938 - DvMF_1161 0.18 +0.6
1,431,072 + DvMF_1161 0.19 +0.4
1,431,192 + DvMF_1161 0.21 +0.4
1,431,200 - DvMF_1161 0.21 +0.5
1,431,407 + DvMF_1161 0.24 +0.4
1,431,482 - DvMF_1161 0.25 +2.4
1,431,538 + DvMF_1161 0.26 +0.6
1,431,546 - DvMF_1161 0.26 +0.8
1,431,563 + DvMF_1161 0.26 +0.6
1,431,607 + DvMF_1161 0.27 +0.6
1,431,629 + DvMF_1161 0.27 +0.3
1,431,673 + DvMF_1161 0.27 +0.5
1,431,860 - DvMF_1161 0.30 -0.0
1,431,874 - DvMF_1161 0.30 +0.9
1,431,958 - DvMF_1161 0.31 +0.3
1,432,045 - DvMF_1161 0.32 +0.8
1,432,403 + DvMF_1161 0.37 +0.5
1,432,469 - DvMF_1161 0.38 +0.8
1,432,587 - DvMF_1161 0.39 +0.3
1,432,603 + DvMF_1161 0.40 +0.3
1,432,757 + DvMF_1161 0.42 +0.6
1,432,951 - DvMF_1161 0.44 -0.2
1,433,101 + DvMF_1161 0.46 +0.6
1,433,542 - DvMF_1161 0.52 +0.8
1,433,570 - DvMF_1161 0.52 -0.0
1,433,725 - DvMF_1161 0.54 +0.1
1,433,886 + DvMF_1161 0.56 +0.7
1,433,886 + DvMF_1161 0.56 +0.1
1,433,886 + DvMF_1161 0.56 +0.1
1,433,894 - DvMF_1161 0.57 +1.0
1,433,894 - DvMF_1161 0.57 +0.5
1,433,894 - DvMF_1161 0.57 +0.6
1,433,894 - DvMF_1161 0.57 +0.3
1,434,025 - DvMF_1161 0.58 -1.1
1,434,035 - DvMF_1161 0.58 +1.0
1,434,434 - DvMF_1161 0.64 +0.4
1,434,523 - DvMF_1161 0.65 +1.0
1,434,534 + DvMF_1161 0.65 +0.1
1,434,547 + +0.6
1,434,555 - DvMF_1161 0.65 +0.2
1,434,599 - DvMF_1161 0.66 +1.2
1,434,694 + DvMF_1161 0.67 +0.1
1,434,779 - DvMF_1161 0.68 +0.3
1,435,015 - DvMF_1161 0.71 +0.6
1,435,038 + DvMF_1161 0.72 +0.6
1,435,409 - DvMF_1161 0.76 +0.5
1,435,559 - DvMF_1161 0.78 +0.0
1,435,637 - DvMF_1161 0.79 +0.4
1,435,775 + DvMF_1161 0.81 -0.4
1,435,778 - DvMF_1161 0.81 -0.1
1,435,939 - DvMF_1161 0.83 -0.4
1,435,998 - DvMF_1161 0.84 +0.4
1,436,004 + DvMF_1161 0.84 +0.5
1,436,217 - DvMF_1161 0.87 +1.0
1,436,304 - DvMF_1161 0.88 +0.6
1,436,368 - DvMF_1161 0.89 +0.4
1,436,472 - +0.6
1,436,703 - +0.4
1,436,732 - +1.2
1,437,209 + +0.2
1,437,272 + +1.5
1,437,335 - +0.4
1,437,536 + DvMF_1162 0.29 +0.6
1,437,910 + DvMF_1162 0.81 +0.0

Or see this region's nucleotide sequence