Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1160

Experiment: 7 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1159 and DvMF_1160 are separated by 165 nucleotides DvMF_1159: DvMF_1159 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 1,424,039 to 1,425,439 _1159 DvMF_1160: DvMF_1160 - cyclic nucleotide-binding protein (RefSeq), at 1,425,605 to 1,427,809 _1160 Position (kb) 1425 1426 1427 1428Strain fitness (log2 ratio) -1 0 1 2at 1424.701 kb on + strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.768 kb on - strand, within DvMF_1159at 1425.101 kb on + strand, within DvMF_1159at 1425.166 kb on - strand, within DvMF_1159at 1425.310 kb on - strandat 1425.401 kb on - strandat 1425.662 kb on - strandat 1425.937 kb on - strand, within DvMF_1160at 1425.942 kb on + strand, within DvMF_1160at 1425.989 kb on - strand, within DvMF_1160at 1426.071 kb on + strand, within DvMF_1160at 1426.172 kb on - strand, within DvMF_1160at 1426.257 kb on - strand, within DvMF_1160at 1426.571 kb on - strand, within DvMF_1160at 1426.736 kb on + strand, within DvMF_1160at 1426.761 kb on - strand, within DvMF_1160at 1427.025 kb on + strand, within DvMF_1160at 1427.169 kb on - strand, within DvMF_1160at 1427.174 kb on + strand, within DvMF_1160at 1427.287 kb on - strand, within DvMF_1160at 1427.417 kb on - strand, within DvMF_1160at 1427.447 kb on - strand, within DvMF_1160at 1427.615 kb on - strandat 1427.674 kb on - strandat 1427.772 kb on + strandat 1427.850 kb on + strandat 1427.956 kb on + strandat 1428.033 kb on + strandat 1428.099 kb on - strandat 1428.127 kb on + strandat 1428.514 kb on - strandat 1428.617 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
remove
1,424,701 + DvMF_1159 0.47 +1.2
1,424,709 - DvMF_1159 0.48 +1.7
1,424,709 - DvMF_1159 0.48 +1.4
1,424,709 - DvMF_1159 0.48 +1.4
1,424,768 - DvMF_1159 0.52 +1.6
1,425,101 + DvMF_1159 0.76 +1.6
1,425,166 - DvMF_1159 0.80 +1.4
1,425,310 - +1.2
1,425,401 - +1.1
1,425,662 - +1.1
1,425,937 - DvMF_1160 0.15 +1.3
1,425,942 + DvMF_1160 0.15 +1.0
1,425,989 - DvMF_1160 0.17 +1.1
1,426,071 + DvMF_1160 0.21 +1.4
1,426,172 - DvMF_1160 0.26 +1.6
1,426,257 - DvMF_1160 0.30 +1.1
1,426,571 - DvMF_1160 0.44 +1.6
1,426,736 + DvMF_1160 0.51 +1.4
1,426,761 - DvMF_1160 0.52 +1.1
1,427,025 + DvMF_1160 0.64 +1.0
1,427,169 - DvMF_1160 0.71 +1.2
1,427,174 + DvMF_1160 0.71 +0.9
1,427,287 - DvMF_1160 0.76 +1.3
1,427,417 - DvMF_1160 0.82 +1.5
1,427,447 - DvMF_1160 0.84 +1.5
1,427,615 - +2.0
1,427,674 - +1.4
1,427,772 + +1.5
1,427,850 + +1.4
1,427,956 + +1.4
1,428,033 + +1.0
1,428,099 - +1.9
1,428,127 + +1.7
1,428,514 - +1.2
1,428,617 - +1.6

Or see this region's nucleotide sequence