Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1159

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1158 and DvMF_1159 overlap by 1 nucleotidesDvMF_1159 and DvMF_1160 are separated by 165 nucleotides DvMF_1158: DvMF_1158 - transglutaminase family protein cysteine peptidase BTLCP (RefSeq), at 1,422,747 to 1,424,039 _1158 DvMF_1159: DvMF_1159 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 1,424,039 to 1,425,439 _1159 DvMF_1160: DvMF_1160 - cyclic nucleotide-binding protein (RefSeq), at 1,425,605 to 1,427,809 _1160 Position (kb) 1424 1425 1426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1423.188 kb on + strand, within DvMF_1158at 1423.355 kb on - strand, within DvMF_1158at 1423.601 kb on + strand, within DvMF_1158at 1424.093 kb on + strandat 1424.233 kb on + strand, within DvMF_1159at 1424.294 kb on + strand, within DvMF_1159at 1424.306 kb on + strand, within DvMF_1159at 1424.488 kb on + strand, within DvMF_1159at 1424.488 kb on + strand, within DvMF_1159at 1424.496 kb on - strand, within DvMF_1159at 1424.701 kb on + strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.709 kb on - strand, within DvMF_1159at 1424.768 kb on - strand, within DvMF_1159at 1425.101 kb on + strand, within DvMF_1159at 1425.166 kb on - strand, within DvMF_1159at 1425.310 kb on - strandat 1425.401 kb on - strandat 1425.662 kb on - strandat 1425.937 kb on - strand, within DvMF_1160at 1425.942 kb on + strand, within DvMF_1160at 1425.989 kb on - strand, within DvMF_1160at 1426.071 kb on + strand, within DvMF_1160at 1426.172 kb on - strand, within DvMF_1160at 1426.257 kb on - strand, within DvMF_1160

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,423,188 + DvMF_1158 0.34 -1.7
1,423,355 - DvMF_1158 0.47 -1.6
1,423,601 + DvMF_1158 0.66 -3.4
1,424,093 + +1.7
1,424,233 + DvMF_1159 0.14 +1.9
1,424,294 + DvMF_1159 0.18 +1.1
1,424,306 + DvMF_1159 0.19 +1.4
1,424,488 + DvMF_1159 0.32 +1.8
1,424,488 + DvMF_1159 0.32 +1.2
1,424,496 - DvMF_1159 0.33 +1.6
1,424,701 + DvMF_1159 0.47 +1.2
1,424,709 - DvMF_1159 0.48 +1.7
1,424,709 - DvMF_1159 0.48 +1.4
1,424,709 - DvMF_1159 0.48 +1.4
1,424,768 - DvMF_1159 0.52 +1.6
1,425,101 + DvMF_1159 0.76 +1.6
1,425,166 - DvMF_1159 0.80 +1.4
1,425,310 - +1.2
1,425,401 - +1.1
1,425,662 - +1.1
1,425,937 - DvMF_1160 0.15 +1.3
1,425,942 + DvMF_1160 0.15 +1.0
1,425,989 - DvMF_1160 0.17 +1.1
1,426,071 + DvMF_1160 0.21 +1.4
1,426,172 - DvMF_1160 0.26 +1.6
1,426,257 - DvMF_1160 0.30 +1.1

Or see this region's nucleotide sequence