Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1135

Experiment: 7 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1134 and DvMF_1135 are separated by 375 nucleotidesDvMF_1135 and DvMF_1136 overlap by 4 nucleotides DvMF_1134: DvMF_1134 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 1,391,367 to 1,393,082 _1134 DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480 _1135 DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385 _1136 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -1 0 1at 1392.500 kb on + strand, within DvMF_1134at 1392.603 kb on - strand, within DvMF_1134at 1392.778 kb on + strand, within DvMF_1134at 1392.778 kb on + strand, within DvMF_1134at 1392.791 kb on + strand, within DvMF_1134at 1392.832 kb on + strand, within DvMF_1134at 1392.936 kb on + strandat 1393.039 kb on - strandat 1393.088 kb on + strandat 1393.154 kb on + strandat 1393.162 kb on - strandat 1393.172 kb on - strandat 1393.172 kb on - strandat 1393.213 kb on + strandat 1393.571 kb on - strand, within DvMF_1135at 1393.636 kb on + strand, within DvMF_1135at 1394.149 kb on - strand, within DvMF_1135at 1394.219 kb on - strand, within DvMF_1135at 1394.305 kb on - strand, within DvMF_1135at 1394.328 kb on + strand, within DvMF_1135at 1394.439 kb on + strandat 1394.439 kb on + strandat 1394.537 kb on + strandat 1394.537 kb on + strandat 1394.545 kb on - strandat 1394.545 kb on - strandat 1394.581 kb on + strand, within DvMF_1136at 1394.748 kb on - strand, within DvMF_1136at 1394.949 kb on - strand, within DvMF_1136at 1395.025 kb on + strand, within DvMF_1136at 1395.214 kb on - strand, within DvMF_1136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
remove
1,392,500 + DvMF_1134 0.66 -0.0
1,392,603 - DvMF_1134 0.72 -0.3
1,392,778 + DvMF_1134 0.82 -0.1
1,392,778 + DvMF_1134 0.82 -0.6
1,392,791 + DvMF_1134 0.83 +1.0
1,392,832 + DvMF_1134 0.85 +0.1
1,392,936 + +0.4
1,393,039 - -0.3
1,393,088 + +0.4
1,393,154 + +0.7
1,393,162 - +0.7
1,393,172 - +0.6
1,393,172 - -0.3
1,393,213 + +0.4
1,393,571 - DvMF_1135 0.11 +0.2
1,393,636 + DvMF_1135 0.17 +1.2
1,394,149 - DvMF_1135 0.68 +0.6
1,394,219 - DvMF_1135 0.74 +0.6
1,394,305 - DvMF_1135 0.83 +0.0
1,394,328 + DvMF_1135 0.85 -0.3
1,394,439 + +0.6
1,394,439 + +0.5
1,394,537 + +0.7
1,394,537 + +0.1
1,394,545 - +0.6
1,394,545 - +0.1
1,394,581 + DvMF_1136 0.11 +1.0
1,394,748 - DvMF_1136 0.30 +0.7
1,394,949 - DvMF_1136 0.52 -0.1
1,395,025 + DvMF_1136 0.60 -0.1
1,395,214 - DvMF_1136 0.81 -0.5

Or see this region's nucleotide sequence