Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1134 and DvMF_1135 are separated by 375 nucleotides DvMF_1135 and DvMF_1136 overlap by 4 nucleotides
DvMF_1134: DvMF_1134 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 1,391,367 to 1,393,082
_1134
DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480
_1135
DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385
_1136
Position (kb)
1393
1394
1395 Strain fitness (log2 ratio)
-1
0
1 at 1392.500 kb on + strand, within DvMF_1134 at 1392.603 kb on - strand, within DvMF_1134 at 1392.778 kb on + strand, within DvMF_1134 at 1392.778 kb on + strand, within DvMF_1134 at 1392.791 kb on + strand, within DvMF_1134 at 1392.832 kb on + strand, within DvMF_1134 at 1392.936 kb on + strand at 1393.039 kb on - strand at 1393.088 kb on + strand at 1393.154 kb on + strand at 1393.162 kb on - strand at 1393.172 kb on - strand at 1393.172 kb on - strand at 1393.213 kb on + strand at 1393.571 kb on - strand, within DvMF_1135 at 1393.636 kb on + strand, within DvMF_1135 at 1394.149 kb on - strand, within DvMF_1135 at 1394.219 kb on - strand, within DvMF_1135 at 1394.305 kb on - strand, within DvMF_1135 at 1394.328 kb on + strand, within DvMF_1135 at 1394.439 kb on + strand at 1394.439 kb on + strand at 1394.537 kb on + strand at 1394.537 kb on + strand at 1394.545 kb on - strand at 1394.545 kb on - strand at 1394.581 kb on + strand, within DvMF_1136 at 1394.748 kb on - strand, within DvMF_1136 at 1394.949 kb on - strand, within DvMF_1136 at 1395.025 kb on + strand, within DvMF_1136 at 1395.214 kb on - strand, within DvMF_1136
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 1,392,500 + DvMF_1134 0.66 -0.0 1,392,603 - DvMF_1134 0.72 -0.3 1,392,778 + DvMF_1134 0.82 -0.1 1,392,778 + DvMF_1134 0.82 -0.6 1,392,791 + DvMF_1134 0.83 +1.0 1,392,832 + DvMF_1134 0.85 +0.1 1,392,936 + +0.4 1,393,039 - -0.3 1,393,088 + +0.4 1,393,154 + +0.7 1,393,162 - +0.7 1,393,172 - +0.6 1,393,172 - -0.3 1,393,213 + +0.4 1,393,571 - DvMF_1135 0.11 +0.2 1,393,636 + DvMF_1135 0.17 +1.2 1,394,149 - DvMF_1135 0.68 +0.6 1,394,219 - DvMF_1135 0.74 +0.6 1,394,305 - DvMF_1135 0.83 +0.0 1,394,328 + DvMF_1135 0.85 -0.3 1,394,439 + +0.6 1,394,439 + +0.5 1,394,537 + +0.7 1,394,537 + +0.1 1,394,545 - +0.6 1,394,545 - +0.1 1,394,581 + DvMF_1136 0.11 +1.0 1,394,748 - DvMF_1136 0.30 +0.7 1,394,949 - DvMF_1136 0.52 -0.1 1,395,025 + DvMF_1136 0.60 -0.1 1,395,214 - DvMF_1136 0.81 -0.5
Or see this region's nucleotide sequence