Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1079

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1078 and DvMF_1079 overlap by 4 nucleotidesDvMF_1079 and DvMF_1080 are separated by 143 nucleotides DvMF_1078: DvMF_1078 - hypothetical protein (RefSeq), at 1,318,795 to 1,319,331 _1078 DvMF_1079: DvMF_1079 - hypothetical protein (RefSeq), at 1,319,328 to 1,319,684 _1079 DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598 _1080 Position (kb) 1319 1320Strain fitness (log2 ratio) -1 0 1 2at 1318.373 kb on + strandat 1318.378 kb on + strandat 1318.413 kb on - strandat 1318.508 kb on - strandat 1318.701 kb on - strandat 1318.970 kb on + strand, within DvMF_1078at 1319.042 kb on - strand, within DvMF_1078at 1319.084 kb on + strand, within DvMF_1078at 1319.106 kb on - strand, within DvMF_1078at 1319.108 kb on + strand, within DvMF_1078at 1319.298 kb on - strandat 1319.306 kb on + strandat 1319.478 kb on + strand, within DvMF_1079at 1319.735 kb on + strandat 1319.814 kb on - strandat 1319.908 kb on + strand, within DvMF_1080at 1319.982 kb on - strand, within DvMF_1080at 1320.016 kb on - strand, within DvMF_1080at 1320.065 kb on - strand, within DvMF_1080at 1320.110 kb on + strand, within DvMF_1080at 1320.110 kb on + strand, within DvMF_1080at 1320.146 kb on - strand, within DvMF_1080at 1320.232 kb on - strand, within DvMF_1080at 1320.233 kb on - strand, within DvMF_1080at 1320.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,318,373 + +0.4
1,318,378 + +0.8
1,318,413 - +0.6
1,318,508 - +1.1
1,318,701 - +1.3
1,318,970 + DvMF_1078 0.33 +0.4
1,319,042 - DvMF_1078 0.46 +0.5
1,319,084 + DvMF_1078 0.54 +1.0
1,319,106 - DvMF_1078 0.58 +0.3
1,319,108 + DvMF_1078 0.58 +0.7
1,319,298 - -0.1
1,319,306 + +0.5
1,319,478 + DvMF_1079 0.42 -0.1
1,319,735 + +0.2
1,319,814 - +1.1
1,319,908 + DvMF_1080 0.10 +2.3
1,319,982 - DvMF_1080 0.20 +0.4
1,320,016 - DvMF_1080 0.24 -0.1
1,320,065 - DvMF_1080 0.31 +0.5
1,320,110 + DvMF_1080 0.37 +0.5
1,320,110 + DvMF_1080 0.37 +0.6
1,320,146 - DvMF_1080 0.41 +0.5
1,320,232 - DvMF_1080 0.52 +0.2
1,320,233 - DvMF_1080 0.53 +0.6
1,320,638 - +0.2

Or see this region's nucleotide sequence