Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1069

Experiment: 7 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1067 and DvMF_1068 are separated by 77 nucleotidesDvMF_1068 and DvMF_1069 are separated by 74 nucleotidesDvMF_1069 and DvMF_1070 are separated by 19 nucleotidesDvMF_1070 and DvMF_1071 are separated by 84 nucleotides DvMF_1067: DvMF_1067 - hypothetical protein (RefSeq), at 1,308,427 to 1,309,047 _1067 DvMF_1068: DvMF_1068 - hypothetical protein (RefSeq), at 1,309,125 to 1,309,523 _1068 DvMF_1069: DvMF_1069 - hypothetical protein (RefSeq), at 1,309,598 to 1,310,512 _1069 DvMF_1070: DvMF_1070 - hypothetical protein (RefSeq), at 1,310,532 to 1,311,197 _1070 DvMF_1071: DvMF_1071 - hypothetical protein (RefSeq), at 1,311,282 to 1,311,773 _1071 Position (kb) 1309 1310 1311Strain fitness (log2 ratio) -1 0 1at 1308.644 kb on + strand, within DvMF_1067at 1308.721 kb on + strand, within DvMF_1067at 1308.729 kb on + strand, within DvMF_1067at 1309.064 kb on - strandat 1309.112 kb on - strandat 1309.361 kb on + strand, within DvMF_1068at 1309.587 kb on + strandat 1309.615 kb on + strandat 1309.741 kb on - strand, within DvMF_1069at 1310.014 kb on + strand, within DvMF_1069at 1310.188 kb on - strand, within DvMF_1069at 1310.286 kb on + strand, within DvMF_1069at 1310.549 kb on + strandat 1310.872 kb on + strand, within DvMF_1070at 1310.882 kb on + strand, within DvMF_1070at 1310.882 kb on + strand, within DvMF_1070at 1310.971 kb on - strand, within DvMF_1070at 1311.046 kb on - strand, within DvMF_1070at 1311.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7 day starvation, 30C
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1,308,644 + DvMF_1067 0.35 -0.1
1,308,721 + DvMF_1067 0.47 -0.1
1,308,729 + DvMF_1067 0.49 -0.1
1,309,064 - +0.6
1,309,112 - +0.7
1,309,361 + DvMF_1068 0.59 +0.6
1,309,587 + +0.7
1,309,615 + +0.7
1,309,741 - DvMF_1069 0.16 +0.7
1,310,014 + DvMF_1069 0.45 +0.7
1,310,188 - DvMF_1069 0.64 +0.2
1,310,286 + DvMF_1069 0.75 +0.1
1,310,549 + +0.3
1,310,872 + DvMF_1070 0.51 +0.3
1,310,882 + DvMF_1070 0.53 +0.4
1,310,882 + DvMF_1070 0.53 +0.7
1,310,971 - DvMF_1070 0.66 +1.0
1,311,046 - DvMF_1070 0.77 +0.7
1,311,319 + +0.8

Or see this region's nucleotide sequence