Experiment: 7 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0550 and DvMF_0551 are separated by 67 nucleotides DvMF_0551 and DvMF_0552 are separated by 347 nucleotides
DvMF_0550: DvMF_0550 - diaminopimelate aminotransferase (RefSeq), at 647,739 to 648,968
_0550
DvMF_0551: DvMF_0551 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq), at 649,036 to 650,937
_0551
DvMF_0552: DvMF_0552 - hypothetical protein (RefSeq), at 651,285 to 652,688
_0552
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 648.067 kb on - strand, within DvMF_0550 at 648.111 kb on - strand, within DvMF_0550 at 648.183 kb on - strand, within DvMF_0550 at 648.241 kb on - strand, within DvMF_0550 at 648.361 kb on + strand, within DvMF_0550 at 648.383 kb on + strand, within DvMF_0550 at 648.391 kb on - strand, within DvMF_0550 at 648.444 kb on - strand, within DvMF_0550 at 648.480 kb on - strand, within DvMF_0550 at 648.556 kb on - strand, within DvMF_0550 at 648.556 kb on - strand, within DvMF_0550 at 648.556 kb on - strand, within DvMF_0550 at 648.806 kb on - strand, within DvMF_0550 at 648.993 kb on - strand at 649.031 kb on + strand at 649.085 kb on + strand at 649.134 kb on - strand at 649.303 kb on - strand, within DvMF_0551 at 649.446 kb on - strand, within DvMF_0551 at 649.781 kb on + strand, within DvMF_0551 at 649.816 kb on + strand, within DvMF_0551 at 650.000 kb on - strand, within DvMF_0551 at 650.216 kb on + strand, within DvMF_0551 at 650.480 kb on + strand, within DvMF_0551 at 650.632 kb on + strand, within DvMF_0551 at 650.831 kb on + strand at 650.839 kb on - strand at 650.852 kb on + strand at 650.872 kb on + strand at 651.015 kb on + strand at 651.151 kb on - strand at 651.154 kb on + strand at 651.168 kb on + strand at 651.234 kb on - strand at 651.262 kb on + strand at 651.262 kb on + strand at 651.262 kb on + strand at 651.282 kb on + strand at 651.290 kb on - strand at 651.349 kb on - strand at 651.369 kb on - strand at 651.681 kb on - strand, within DvMF_0552 at 651.744 kb on - strand, within DvMF_0552 at 651.761 kb on - strand, within DvMF_0552 at 651.797 kb on + strand, within DvMF_0552 at 651.841 kb on - strand, within DvMF_0552 at 651.858 kb on - strand, within DvMF_0552
Per-strain Table
Position Strand Gene LocusTag Fraction 7 day starvation, 30C remove 648,067 - DvMF_0550 0.27 +3.5 648,111 - DvMF_0550 0.30 +0.9 648,183 - DvMF_0550 0.36 +0.3 648,241 - DvMF_0550 0.41 +0.9 648,361 + DvMF_0550 0.51 +0.7 648,383 + DvMF_0550 0.52 +0.8 648,391 - DvMF_0550 0.53 +0.5 648,444 - DvMF_0550 0.57 +0.8 648,480 - DvMF_0550 0.60 +0.1 648,556 - DvMF_0550 0.66 +0.5 648,556 - DvMF_0550 0.66 +0.7 648,556 - DvMF_0550 0.66 +0.3 648,806 - DvMF_0550 0.87 -0.0 648,993 - +0.6 649,031 + +0.5 649,085 + -0.8 649,134 - -0.2 649,303 - DvMF_0551 0.14 -2.2 649,446 - DvMF_0551 0.22 -0.9 649,781 + DvMF_0551 0.39 +1.8 649,816 + DvMF_0551 0.41 -0.7 650,000 - DvMF_0551 0.51 +0.6 650,216 + DvMF_0551 0.62 -0.6 650,480 + DvMF_0551 0.76 -1.3 650,632 + DvMF_0551 0.84 -0.4 650,831 + -0.4 650,839 - +0.6 650,852 + -0.2 650,872 + -0.4 651,015 + +0.4 651,151 - +0.9 651,154 + +1.0 651,168 + +0.6 651,234 - +0.8 651,262 + -0.3 651,262 + +0.5 651,262 + +0.0 651,282 + +0.5 651,290 - +0.1 651,349 - +0.4 651,369 - +0.0 651,681 - DvMF_0552 0.28 -0.8 651,744 - DvMF_0552 0.33 -0.2 651,761 - DvMF_0552 0.34 +0.5 651,797 + DvMF_0552 0.36 +0.2 651,841 - DvMF_0552 0.40 +0.1 651,858 - DvMF_0552 0.41 +0.0
Or see this region's nucleotide sequence