Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2942

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2941 and Dshi_2942 are separated by 90 nucleotidesDshi_2942 and Dshi_2943 are separated by 66 nucleotides Dshi_2941: Dshi_2941 - hypothetical protein (RefSeq), at 3,100,657 to 3,101,940 _2941 Dshi_2942: Dshi_2942 - ChaC family protein (RefSeq), at 3,102,031 to 3,102,573 _2942 Dshi_2943: Dshi_2943 - hypothetical protein (RefSeq), at 3,102,640 to 3,103,638 _2943 Position (kb) 3102 3103Strain fitness (log2 ratio) -2 -1 0 1at 3101.119 kb on + strand, within Dshi_2941at 3101.770 kb on + strand, within Dshi_2941at 3101.942 kb on + strandat 3101.966 kb on - strandat 3102.029 kb on + strandat 3102.382 kb on + strand, within Dshi_2942at 3102.445 kb on + strand, within Dshi_2942at 3102.686 kb on - strandat 3102.815 kb on + strand, within Dshi_2943at 3102.823 kb on - strand, within Dshi_2943at 3103.169 kb on + strand, within Dshi_2943at 3103.497 kb on - strand, within Dshi_2943

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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3,101,119 + Dshi_2941 0.36 +0.6
3,101,770 + Dshi_2941 0.87 -1.2
3,101,942 + +0.4
3,101,966 - -0.4
3,102,029 + +0.6
3,102,382 + Dshi_2942 0.65 -1.5
3,102,445 + Dshi_2942 0.76 -0.7
3,102,686 - -1.6
3,102,815 + Dshi_2943 0.18 +0.3
3,102,823 - Dshi_2943 0.18 -0.9
3,103,169 + Dshi_2943 0.53 -1.9
3,103,497 - Dshi_2943 0.86 -1.2

Or see this region's nucleotide sequence