Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0972

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0971 and Dshi_0972 are separated by 12 nucleotidesDshi_0972 and Dshi_0973 are separated by 10 nucleotidesDshi_0973 and Dshi_0974 are separated by 113 nucleotides Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442 _0971 Dshi_0972: Dshi_0972 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 993,455 to 994,285 _0972 Dshi_0973: Dshi_0973 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 994,296 to 995,162 _0973 Dshi_0974: Dshi_0974 - extracellular solute-binding protein family 1 (RefSeq), at 995,276 to 996,583 _0974 Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1at 992.614 kb on + strand, within Dshi_0971at 992.636 kb on - strand, within Dshi_0971at 992.849 kb on - strand, within Dshi_0971at 992.853 kb on + strand, within Dshi_0971at 992.863 kb on + strand, within Dshi_0971at 992.864 kb on + strand, within Dshi_0971at 992.892 kb on - strand, within Dshi_0971at 992.897 kb on - strand, within Dshi_0971at 993.007 kb on + strand, within Dshi_0971at 993.104 kb on - strand, within Dshi_0971at 993.222 kb on - strand, within Dshi_0971at 993.324 kb on - strand, within Dshi_0971at 993.373 kb on + strandat 993.408 kb on - strandat 993.539 kb on + strand, within Dshi_0972at 993.547 kb on - strand, within Dshi_0972at 993.547 kb on - strand, within Dshi_0972at 993.549 kb on + strand, within Dshi_0972at 993.557 kb on - strand, within Dshi_0972at 993.574 kb on - strand, within Dshi_0972at 993.581 kb on - strand, within Dshi_0972at 993.634 kb on + strand, within Dshi_0972at 993.695 kb on - strand, within Dshi_0972at 993.699 kb on + strand, within Dshi_0972at 993.886 kb on + strand, within Dshi_0972at 993.909 kb on + strand, within Dshi_0972at 993.917 kb on - strand, within Dshi_0972at 994.017 kb on + strand, within Dshi_0972at 994.115 kb on - strand, within Dshi_0972at 994.181 kb on - strand, within Dshi_0972at 994.181 kb on - strand, within Dshi_0972at 994.222 kb on + strandat 994.230 kb on + strandat 994.230 kb on + strandat 994.235 kb on + strandat 994.243 kb on - strandat 994.243 kb on - strandat 994.253 kb on - strandat 994.384 kb on - strand, within Dshi_0973at 994.447 kb on - strand, within Dshi_0973at 994.544 kb on - strand, within Dshi_0973at 994.600 kb on + strand, within Dshi_0973at 994.641 kb on - strand, within Dshi_0973at 994.679 kb on + strand, within Dshi_0973at 994.689 kb on + strand, within Dshi_0973at 994.740 kb on - strand, within Dshi_0973at 994.853 kb on - strand, within Dshi_0973at 994.915 kb on - strand, within Dshi_0973at 994.941 kb on + strand, within Dshi_0973at 994.954 kb on - strand, within Dshi_0973at 995.005 kb on + strand, within Dshi_0973at 995.037 kb on - strand, within Dshi_0973at 995.173 kb on - strandat 995.185 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
remove
992,614 + Dshi_0971 0.18 -1.3
992,636 - Dshi_0971 0.20 -0.6
992,849 - Dshi_0971 0.41 +0.8
992,853 + Dshi_0971 0.41 +0.5
992,863 + Dshi_0971 0.42 -0.6
992,864 + Dshi_0971 0.42 -0.2
992,892 - Dshi_0971 0.45 -0.6
992,897 - Dshi_0971 0.46 -0.1
993,007 + Dshi_0971 0.57 -0.4
993,104 - Dshi_0971 0.66 +0.3
993,222 - Dshi_0971 0.78 -2.0
993,324 - Dshi_0971 0.88 +0.3
993,373 + +0.2
993,408 - +0.7
993,539 + Dshi_0972 0.10 -0.1
993,547 - Dshi_0972 0.11 +0.2
993,547 - Dshi_0972 0.11 -2.1
993,549 + Dshi_0972 0.11 +0.0
993,557 - Dshi_0972 0.12 -1.2
993,574 - Dshi_0972 0.14 -0.2
993,581 - Dshi_0972 0.15 -0.5
993,634 + Dshi_0972 0.22 +0.9
993,695 - Dshi_0972 0.29 +0.5
993,699 + Dshi_0972 0.29 -0.0
993,886 + Dshi_0972 0.52 -0.4
993,909 + Dshi_0972 0.55 +0.1
993,917 - Dshi_0972 0.56 -0.1
994,017 + Dshi_0972 0.68 +0.5
994,115 - Dshi_0972 0.79 -1.2
994,181 - Dshi_0972 0.87 +0.5
994,181 - Dshi_0972 0.87 -0.7
994,222 + +0.1
994,230 + +0.5
994,230 + -2.0
994,235 + -0.2
994,243 - +0.3
994,243 - -0.1
994,253 - +0.5
994,384 - Dshi_0973 0.10 -0.2
994,447 - Dshi_0973 0.17 -0.2
994,544 - Dshi_0973 0.29 +1.4
994,600 + Dshi_0973 0.35 -0.7
994,641 - Dshi_0973 0.40 +0.3
994,679 + Dshi_0973 0.44 -1.6
994,689 + Dshi_0973 0.45 -1.2
994,740 - Dshi_0973 0.51 -0.8
994,853 - Dshi_0973 0.64 -0.0
994,915 - Dshi_0973 0.71 -0.2
994,941 + Dshi_0973 0.74 -0.5
994,954 - Dshi_0973 0.76 -0.0
995,005 + Dshi_0973 0.82 +0.7
995,037 - Dshi_0973 0.85 -0.3
995,173 - +1.1
995,185 - +0.0

Or see this region's nucleotide sequence