Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_786 and HP15_787 overlap by 11 nucleotides HP15_787 and HP15_788 are separated by 12 nucleotides HP15_788 and HP15_789 are separated by 225 nucleotides
HP15_786: HP15_786 - DNA repair protein RecO, at 797,523 to 798,251
_786
HP15_787: HP15_787 - pyridoxal phosphate biosynthetic protein PdxJ, at 798,241 to 798,981
_787
HP15_788: HP15_788 - multi-sensor hybrid histidine kinase, at 798,994 to 801,867
_788
HP15_789: HP15_789 - cysteine synthase B, at 802,093 to 802,986
_789
Position (kb) 798
799
800
801
802 Strain fitness (log2 ratio) -1
0
1 at 798.203 kb on - strand at 798.994 kb on - strand at 798.999 kb on - strand at 798.999 kb on - strand at 798.999 kb on - strand at 799.063 kb on - strand at 799.063 kb on - strand at 799.079 kb on + strand at 799.079 kb on + strand at 799.087 kb on - strand at 799.092 kb on + strand at 799.134 kb on - strand at 799.167 kb on - strand at 799.219 kb on - strand at 799.395 kb on + strand, within HP15_788 at 799.459 kb on + strand, within HP15_788 at 799.510 kb on - strand, within HP15_788 at 799.591 kb on + strand, within HP15_788 at 799.629 kb on + strand, within HP15_788 at 799.637 kb on - strand, within HP15_788 at 799.639 kb on + strand, within HP15_788 at 799.714 kb on - strand, within HP15_788 at 799.719 kb on - strand, within HP15_788 at 799.997 kb on - strand, within HP15_788 at 800.054 kb on + strand, within HP15_788 at 800.062 kb on - strand, within HP15_788 at 800.064 kb on + strand, within HP15_788 at 800.220 kb on + strand, within HP15_788 at 800.307 kb on + strand, within HP15_788 at 800.319 kb on + strand, within HP15_788 at 800.327 kb on - strand, within HP15_788 at 800.339 kb on + strand, within HP15_788 at 800.404 kb on + strand, within HP15_788 at 800.417 kb on - strand, within HP15_788 at 800.633 kb on - strand, within HP15_788 at 800.684 kb on + strand, within HP15_788 at 800.692 kb on - strand, within HP15_788 at 800.786 kb on - strand, within HP15_788 at 800.812 kb on - strand, within HP15_788 at 800.819 kb on + strand, within HP15_788 at 800.919 kb on - strand, within HP15_788 at 800.952 kb on - strand, within HP15_788 at 800.998 kb on - strand, within HP15_788 at 801.122 kb on + strand, within HP15_788 at 801.127 kb on + strand, within HP15_788 at 801.190 kb on + strand, within HP15_788 at 801.218 kb on + strand, within HP15_788 at 801.298 kb on + strand, within HP15_788 at 801.397 kb on + strand, within HP15_788 at 801.397 kb on + strand, within HP15_788 at 801.460 kb on + strand, within HP15_788 at 801.460 kb on - strand, within HP15_788 at 801.540 kb on + strand, within HP15_788 at 801.548 kb on - strand, within HP15_788 at 801.563 kb on + strand, within HP15_788 at 801.565 kb on - strand, within HP15_788 at 801.568 kb on + strand, within HP15_788 at 801.576 kb on - strand, within HP15_788 at 801.645 kb on + strand at 801.667 kb on - strand at 801.736 kb on - strand at 801.795 kb on + strand at 801.805 kb on + strand at 801.819 kb on + strand at 802.033 kb on - strand at 802.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 798,203 - -1.4 798,994 - -0.0 798,999 - +0.2 798,999 - +0.7 798,999 - +0.0 799,063 - -0.1 799,063 - +0.3 799,079 + -0.1 799,079 + -1.2 799,087 - -1.4 799,092 + -0.0 799,134 - -0.3 799,167 - -0.3 799,219 - -0.3 799,395 + HP15_788 0.14 +0.3 799,459 + HP15_788 0.16 +0.5 799,510 - HP15_788 0.18 -0.0 799,591 + HP15_788 0.21 +0.1 799,629 + HP15_788 0.22 -0.0 799,637 - HP15_788 0.22 +0.3 799,639 + HP15_788 0.22 +0.2 799,714 - HP15_788 0.25 -1.3 799,719 - HP15_788 0.25 +0.5 799,997 - HP15_788 0.35 +0.9 800,054 + HP15_788 0.37 -0.0 800,062 - HP15_788 0.37 -1.7 800,064 + HP15_788 0.37 -0.7 800,220 + HP15_788 0.43 -0.7 800,307 + HP15_788 0.46 -1.0 800,319 + HP15_788 0.46 -0.0 800,327 - HP15_788 0.46 +0.4 800,339 + HP15_788 0.47 -0.6 800,404 + HP15_788 0.49 -0.4 800,417 - HP15_788 0.50 +0.1 800,633 - HP15_788 0.57 +0.6 800,684 + HP15_788 0.59 +0.0 800,692 - HP15_788 0.59 -1.2 800,786 - HP15_788 0.62 -0.5 800,812 - HP15_788 0.63 +0.4 800,819 + HP15_788 0.64 -0.3 800,919 - HP15_788 0.67 +0.2 800,952 - HP15_788 0.68 -1.6 800,998 - HP15_788 0.70 -0.3 801,122 + HP15_788 0.74 -0.3 801,127 + HP15_788 0.74 -1.4 801,190 + HP15_788 0.76 -0.0 801,218 + HP15_788 0.77 -0.4 801,298 + HP15_788 0.80 +0.0 801,397 + HP15_788 0.84 +0.2 801,397 + HP15_788 0.84 -0.7 801,460 + HP15_788 0.86 -0.4 801,460 - HP15_788 0.86 +0.1 801,540 + HP15_788 0.89 -0.2 801,548 - HP15_788 0.89 -0.1 801,563 + HP15_788 0.89 +0.1 801,565 - HP15_788 0.89 +1.0 801,568 + HP15_788 0.90 -0.3 801,576 - HP15_788 0.90 -0.7 801,645 + -0.6 801,667 - -1.0 801,736 - -0.1 801,795 + -0.2 801,805 + +0.3 801,819 + -0.1 802,033 - -0.3 802,050 - +1.1
Or see this region's nucleotide sequence