Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06790 and PGA1_c06800 overlap by 1 nucleotides PGA1_c06800 and PGA1_c06810 overlap by 1 nucleotides PGA1_c06810 and PGA1_c06820 overlap by 4 nucleotides
PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138
_c06790
PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052
_c06800
PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032
_c06810
PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994
_c06820
Position (kb) 700
701
702 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.180 kb on + strand at 699.185 kb on + strand at 699.185 kb on + strand at 699.265 kb on - strand, within PGA1_c06790 at 699.277 kb on + strand, within PGA1_c06790 at 699.287 kb on + strand, within PGA1_c06790 at 699.305 kb on - strand, within PGA1_c06790 at 699.334 kb on - strand, within PGA1_c06790 at 699.349 kb on - strand, within PGA1_c06790 at 699.384 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.447 kb on + strand, within PGA1_c06790 at 699.471 kb on - strand, within PGA1_c06790 at 699.508 kb on + strand, within PGA1_c06790 at 699.516 kb on - strand, within PGA1_c06790 at 699.521 kb on - strand, within PGA1_c06790 at 699.578 kb on + strand, within PGA1_c06790 at 699.636 kb on + strand, within PGA1_c06790 at 699.669 kb on + strand, within PGA1_c06790 at 699.678 kb on - strand, within PGA1_c06790 at 699.708 kb on + strand, within PGA1_c06790 at 699.732 kb on + strand, within PGA1_c06790 at 699.738 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.746 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.822 kb on - strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.877 kb on - strand, within PGA1_c06790 at 699.879 kb on + strand, within PGA1_c06790 at 699.882 kb on + strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.887 kb on - strand, within PGA1_c06790 at 699.908 kb on - strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.980 kb on - strand, within PGA1_c06790 at 699.982 kb on + strand, within PGA1_c06790 at 700.007 kb on + strand, within PGA1_c06790 at 700.108 kb on + strand at 700.117 kb on + strand at 700.123 kb on + strand at 700.123 kb on + strand at 700.136 kb on - strand at 700.163 kb on - strand at 700.171 kb on - strand at 700.222 kb on + strand at 700.226 kb on - strand at 700.227 kb on + strand at 700.286 kb on + strand, within PGA1_c06800 at 700.286 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.292 kb on + strand, within PGA1_c06800 at 700.300 kb on - strand, within PGA1_c06800 at 700.367 kb on + strand, within PGA1_c06800 at 700.367 kb on - strand, within PGA1_c06800 at 700.425 kb on + strand, within PGA1_c06800 at 700.458 kb on + strand, within PGA1_c06800 at 700.467 kb on - strand, within PGA1_c06800 at 700.467 kb on - strand, within PGA1_c06800 at 700.474 kb on - strand, within PGA1_c06800 at 700.540 kb on + strand, within PGA1_c06800 at 700.561 kb on - strand, within PGA1_c06800 at 700.561 kb on - strand, within PGA1_c06800 at 700.595 kb on + strand, within PGA1_c06800 at 700.595 kb on - strand, within PGA1_c06800 at 700.603 kb on - strand, within PGA1_c06800 at 700.603 kb on - strand, within PGA1_c06800 at 700.686 kb on + strand, within PGA1_c06800 at 700.743 kb on + strand, within PGA1_c06800 at 700.784 kb on + strand, within PGA1_c06800 at 700.785 kb on + strand, within PGA1_c06800 at 700.795 kb on - strand, within PGA1_c06800 at 700.827 kb on - strand, within PGA1_c06800 at 700.860 kb on - strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.921 kb on + strand, within PGA1_c06800 at 700.935 kb on + strand, within PGA1_c06800 at 700.945 kb on - strand, within PGA1_c06800 at 700.955 kb on - strand, within PGA1_c06800 at 700.977 kb on - strand at 700.977 kb on - strand at 700.980 kb on + strand at 700.985 kb on + strand at 700.987 kb on - strand at 700.993 kb on - strand at 700.993 kb on - strand at 701.008 kb on - strand at 701.010 kb on + strand at 701.062 kb on - strand at 701.122 kb on - strand at 701.122 kb on - strand at 701.132 kb on + strand at 701.190 kb on + strand, within PGA1_c06810 at 701.193 kb on - strand, within PGA1_c06810 at 701.203 kb on - strand, within PGA1_c06810 at 701.203 kb on - strand, within PGA1_c06810 at 701.367 kb on - strand, within PGA1_c06810 at 701.413 kb on + strand, within PGA1_c06810 at 701.423 kb on + strand, within PGA1_c06810 at 701.428 kb on + strand, within PGA1_c06810 at 701.431 kb on - strand, within PGA1_c06810 at 701.436 kb on - strand, within PGA1_c06810 at 701.437 kb on - strand, within PGA1_c06810 at 701.438 kb on - strand, within PGA1_c06810 at 701.484 kb on + strand, within PGA1_c06810 at 701.532 kb on + strand, within PGA1_c06810 at 701.558 kb on - strand, within PGA1_c06810 at 701.592 kb on - strand, within PGA1_c06810 at 701.602 kb on - strand, within PGA1_c06810 at 701.602 kb on - strand, within PGA1_c06810 at 701.602 kb on - strand, within PGA1_c06810 at 701.650 kb on - strand, within PGA1_c06810 at 701.650 kb on - strand, within PGA1_c06810 at 701.657 kb on - strand, within PGA1_c06810 at 701.668 kb on + strand, within PGA1_c06810 at 701.676 kb on - strand, within PGA1_c06810 at 701.689 kb on + strand, within PGA1_c06810 at 701.696 kb on - strand, within PGA1_c06810 at 701.697 kb on - strand, within PGA1_c06810 at 701.697 kb on - strand, within PGA1_c06810 at 701.738 kb on - strand, within PGA1_c06810 at 701.738 kb on - strand, within PGA1_c06810 at 701.769 kb on + strand, within PGA1_c06810 at 701.798 kb on + strand, within PGA1_c06810 at 701.798 kb on + strand, within PGA1_c06810 at 701.806 kb on - strand, within PGA1_c06810 at 701.821 kb on + strand, within PGA1_c06810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 699,158 + -0.9 699,158 + -0.4 699,158 + +0.8 699,180 + -0.6 699,185 + +1.0 699,185 + +0.8 699,265 - PGA1_c06790 0.11 -0.0 699,277 + PGA1_c06790 0.12 -0.3 699,287 + PGA1_c06790 0.13 -0.3 699,305 - PGA1_c06790 0.15 +0.3 699,334 - PGA1_c06790 0.18 +2.4 699,349 - PGA1_c06790 0.19 -0.2 699,384 - PGA1_c06790 0.23 +0.6 699,429 - PGA1_c06790 0.28 +1.0 699,429 - PGA1_c06790 0.28 +0.0 699,431 - PGA1_c06790 0.28 +0.6 699,431 - PGA1_c06790 0.28 +0.0 699,431 - PGA1_c06790 0.28 -0.2 699,447 + PGA1_c06790 0.29 +0.4 699,471 - PGA1_c06790 0.32 -0.4 699,508 + PGA1_c06790 0.36 +0.1 699,516 - PGA1_c06790 0.36 -0.5 699,521 - PGA1_c06790 0.37 -0.7 699,578 + PGA1_c06790 0.43 +0.6 699,636 + PGA1_c06790 0.49 -0.8 699,669 + PGA1_c06790 0.52 -2.4 699,678 - PGA1_c06790 0.53 +0.2 699,708 + PGA1_c06790 0.56 +0.6 699,732 + PGA1_c06790 0.59 +0.4 699,738 + PGA1_c06790 0.59 +0.3 699,744 + PGA1_c06790 0.60 +0.1 699,744 + PGA1_c06790 0.60 -0.1 699,744 + PGA1_c06790 0.60 +0.4 699,744 + PGA1_c06790 0.60 -0.5 699,746 - PGA1_c06790 0.60 -1.4 699,752 - PGA1_c06790 0.61 -1.1 699,752 - PGA1_c06790 0.61 -0.5 699,752 - PGA1_c06790 0.61 +0.0 699,822 - PGA1_c06790 0.68 +0.5 699,874 + PGA1_c06790 0.73 +0.3 699,874 + PGA1_c06790 0.73 -0.3 699,877 - PGA1_c06790 0.73 -0.4 699,879 + PGA1_c06790 0.73 -2.0 699,882 + PGA1_c06790 0.74 -1.0 699,882 - PGA1_c06790 0.74 -0.2 699,882 - PGA1_c06790 0.74 -0.8 699,887 - PGA1_c06790 0.74 +0.3 699,908 - PGA1_c06790 0.76 +0.3 699,972 + PGA1_c06790 0.83 -1.4 699,972 + PGA1_c06790 0.83 +0.2 699,972 + PGA1_c06790 0.83 -0.4 699,972 + PGA1_c06790 0.83 -2.7 699,980 - PGA1_c06790 0.84 +0.0 699,982 + PGA1_c06790 0.84 +0.1 700,007 + PGA1_c06790 0.87 +0.3 700,108 + -1.4 700,117 + +1.5 700,123 + -0.5 700,123 + -0.8 700,136 - +2.9 700,163 - +0.3 700,171 - -0.3 700,222 + +0.0 700,226 - -2.1 700,227 + -0.4 700,286 + PGA1_c06800 0.16 +0.5 700,286 + PGA1_c06800 0.16 +0.3 700,292 + PGA1_c06800 0.17 +0.6 700,292 + PGA1_c06800 0.17 +0.3 700,292 + PGA1_c06800 0.17 -0.1 700,292 + PGA1_c06800 0.17 -1.4 700,292 + PGA1_c06800 0.17 -2.3 700,292 + PGA1_c06800 0.17 -1.0 700,300 - PGA1_c06800 0.18 +0.4 700,367 + PGA1_c06800 0.25 -0.0 700,367 - PGA1_c06800 0.25 +1.0 700,425 + PGA1_c06800 0.31 +0.0 700,458 + PGA1_c06800 0.35 -0.4 700,467 - PGA1_c06800 0.36 +0.6 700,467 - PGA1_c06800 0.36 +0.9 700,474 - PGA1_c06800 0.37 +1.5 700,540 + PGA1_c06800 0.44 +1.1 700,561 - PGA1_c06800 0.46 -0.1 700,561 - PGA1_c06800 0.46 +2.9 700,595 + PGA1_c06800 0.50 +0.6 700,595 - PGA1_c06800 0.50 +1.6 700,603 - PGA1_c06800 0.51 +2.9 700,603 - PGA1_c06800 0.51 -0.1 700,686 + PGA1_c06800 0.60 +2.2 700,743 + PGA1_c06800 0.66 -2.4 700,784 + PGA1_c06800 0.71 +0.3 700,785 + PGA1_c06800 0.71 -0.6 700,795 - PGA1_c06800 0.72 +1.2 700,827 - PGA1_c06800 0.75 +0.4 700,860 - PGA1_c06800 0.79 -0.7 700,921 + PGA1_c06800 0.86 -0.6 700,921 + PGA1_c06800 0.86 +0.0 700,921 + PGA1_c06800 0.86 -0.4 700,935 + PGA1_c06800 0.87 -0.5 700,945 - PGA1_c06800 0.88 +1.1 700,955 - PGA1_c06800 0.89 -0.1 700,977 - +0.0 700,977 - +0.6 700,980 + +0.0 700,985 + -1.4 700,987 - +0.1 700,993 - +0.3 700,993 - +0.9 701,008 - +0.3 701,010 + -0.3 701,062 - +0.9 701,122 - +0.1 701,122 - -0.9 701,132 + -0.7 701,190 + PGA1_c06810 0.14 -0.8 701,193 - PGA1_c06810 0.14 +1.2 701,203 - PGA1_c06810 0.15 +0.3 701,203 - PGA1_c06810 0.15 -1.2 701,367 - PGA1_c06810 0.32 +0.1 701,413 + PGA1_c06810 0.37 -0.4 701,423 + PGA1_c06810 0.38 +1.1 701,428 + PGA1_c06810 0.38 +0.6 701,431 - PGA1_c06810 0.39 +0.8 701,436 - PGA1_c06810 0.39 -1.4 701,437 - PGA1_c06810 0.39 -0.1 701,438 - PGA1_c06810 0.39 +0.4 701,484 + PGA1_c06810 0.44 +1.6 701,532 + PGA1_c06810 0.49 -1.1 701,558 - PGA1_c06810 0.52 +0.4 701,592 - PGA1_c06810 0.55 +0.6 701,602 - PGA1_c06810 0.56 +0.6 701,602 - PGA1_c06810 0.56 +1.2 701,602 - PGA1_c06810 0.56 +1.2 701,650 - PGA1_c06810 0.61 -1.1 701,650 - PGA1_c06810 0.61 +0.3 701,657 - PGA1_c06810 0.62 -0.6 701,668 + PGA1_c06810 0.63 -1.0 701,676 - PGA1_c06810 0.64 +0.6 701,689 + PGA1_c06810 0.65 +0.2 701,696 - PGA1_c06810 0.66 -1.5 701,697 - PGA1_c06810 0.66 +0.6 701,697 - PGA1_c06810 0.66 -0.3 701,738 - PGA1_c06810 0.70 +0.2 701,738 - PGA1_c06810 0.70 +0.4 701,769 + PGA1_c06810 0.73 +0.2 701,798 + PGA1_c06810 0.76 -0.7 701,798 + PGA1_c06810 0.76 -0.1 701,806 - PGA1_c06810 0.77 -0.7 701,821 + PGA1_c06810 0.78 -0.5
Or see this region's nucleotide sequence