Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04530

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04520 and PGA1_c04530 are separated by 70 nucleotidesPGA1_c04530 and PGA1_c04540 are separated by 140 nucleotides PGA1_c04520: PGA1_c04520 - putative ABC transporter cyclic nucleotide-binding protein, at 442,406 to 445,363 _c04520 PGA1_c04530: PGA1_c04530 - ureidoglycolate lyase, at 445,434 to 446,282 _c04530 PGA1_c04540: PGA1_c04540 - putative d-galactonate dehydratase, at 446,423 to 447,655 _c04540 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.436 kb on - strand, within PGA1_c04520at 444.442 kb on + strand, within PGA1_c04520at 444.450 kb on - strand, within PGA1_c04520at 444.559 kb on + strand, within PGA1_c04520at 444.559 kb on + strand, within PGA1_c04520at 444.606 kb on - strand, within PGA1_c04520at 444.668 kb on - strand, within PGA1_c04520at 444.756 kb on + strand, within PGA1_c04520at 444.878 kb on - strand, within PGA1_c04520at 444.878 kb on - strand, within PGA1_c04520at 444.886 kb on - strand, within PGA1_c04520at 444.908 kb on - strand, within PGA1_c04520at 444.983 kb on + strand, within PGA1_c04520at 444.985 kb on + strand, within PGA1_c04520at 444.991 kb on - strand, within PGA1_c04520at 444.991 kb on - strand, within PGA1_c04520at 444.995 kb on + strand, within PGA1_c04520at 445.026 kb on + strand, within PGA1_c04520at 445.169 kb on - strandat 445.174 kb on + strandat 445.182 kb on - strandat 445.274 kb on + strandat 445.283 kb on - strandat 445.287 kb on + strandat 445.320 kb on + strandat 445.328 kb on - strandat 445.328 kb on - strandat 445.338 kb on - strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.378 kb on + strandat 445.380 kb on + strandat 445.386 kb on - strandat 445.386 kb on - strandat 445.386 kb on - strandat 445.407 kb on - strandat 445.412 kb on + strandat 445.537 kb on + strand, within PGA1_c04530at 445.542 kb on + strand, within PGA1_c04530at 445.545 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.550 kb on - strand, within PGA1_c04530at 445.618 kb on + strand, within PGA1_c04530at 445.662 kb on + strand, within PGA1_c04530at 445.665 kb on - strand, within PGA1_c04530at 445.670 kb on - strand, within PGA1_c04530at 445.804 kb on - strand, within PGA1_c04530at 445.809 kb on + strand, within PGA1_c04530at 445.888 kb on - strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.890 kb on + strand, within PGA1_c04530at 445.940 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.947 kb on + strand, within PGA1_c04530at 445.955 kb on - strand, within PGA1_c04530at 445.963 kb on + strand, within PGA1_c04530at 446.072 kb on - strand, within PGA1_c04530at 446.077 kb on + strand, within PGA1_c04530at 446.128 kb on + strand, within PGA1_c04530at 446.140 kb on - strand, within PGA1_c04530at 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.203 kb on + strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.211 kb on - strandat 446.221 kb on + strandat 446.303 kb on + strandat 446.311 kb on - strandat 446.332 kb on + strandat 446.341 kb on + strandat 446.367 kb on + strandat 446.411 kb on - strandat 446.424 kb on - strandat 446.434 kb on - strandat 446.514 kb on - strandat 446.514 kb on - strandat 446.550 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.563 kb on + strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.571 kb on - strand, within PGA1_c04540at 446.581 kb on - strand, within PGA1_c04540at 446.604 kb on + strand, within PGA1_c04540at 446.613 kb on + strand, within PGA1_c04540at 446.657 kb on - strand, within PGA1_c04540at 446.672 kb on + strand, within PGA1_c04540at 446.744 kb on + strand, within PGA1_c04540at 446.794 kb on - strand, within PGA1_c04540at 446.958 kb on + strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 446.961 kb on - strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.038 kb on + strand, within PGA1_c04540at 447.043 kb on + strand, within PGA1_c04540at 447.061 kb on - strand, within PGA1_c04540at 447.169 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.171 kb on + strand, within PGA1_c04540at 447.222 kb on + strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.222 kb on - strand, within PGA1_c04540at 447.235 kb on + strand, within PGA1_c04540at 447.269 kb on + strand, within PGA1_c04540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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444,436 - PGA1_c04520 0.69 -0.8
444,442 + PGA1_c04520 0.69 -3.7
444,450 - PGA1_c04520 0.69 -2.2
444,559 + PGA1_c04520 0.73 +0.1
444,559 + PGA1_c04520 0.73 -1.8
444,606 - PGA1_c04520 0.74 +0.1
444,668 - PGA1_c04520 0.76 -1.6
444,756 + PGA1_c04520 0.79 -0.4
444,878 - PGA1_c04520 0.84 -1.6
444,878 - PGA1_c04520 0.84 +0.3
444,886 - PGA1_c04520 0.84 -1.9
444,908 - PGA1_c04520 0.85 -0.7
444,983 + PGA1_c04520 0.87 -2.1
444,985 + PGA1_c04520 0.87 -1.5
444,991 - PGA1_c04520 0.87 -0.7
444,991 - PGA1_c04520 0.87 -0.7
444,995 + PGA1_c04520 0.88 -1.1
445,026 + PGA1_c04520 0.89 +1.7
445,169 - -1.7
445,174 + -0.8
445,182 - -1.8
445,274 + -1.4
445,283 - -2.7
445,287 + -2.1
445,320 + -2.1
445,328 - -2.5
445,328 - -0.4
445,338 - -1.9
445,378 + -1.1
445,378 + +0.5
445,378 + +0.5
445,378 + +0.9
445,380 + -0.1
445,386 - -0.6
445,386 - +1.0
445,386 - +1.2
445,407 - -0.8
445,412 + +1.6
445,537 + PGA1_c04530 0.12 -1.3
445,542 + PGA1_c04530 0.13 -0.8
445,545 - PGA1_c04530 0.13 +0.1
445,550 - PGA1_c04530 0.14 -0.5
445,550 - PGA1_c04530 0.14 -0.1
445,550 - PGA1_c04530 0.14 -2.1
445,618 + PGA1_c04530 0.22 +1.0
445,662 + PGA1_c04530 0.27 +1.4
445,665 - PGA1_c04530 0.27 +0.2
445,670 - PGA1_c04530 0.28 +0.7
445,804 - PGA1_c04530 0.44 +0.5
445,809 + PGA1_c04530 0.44 -1.5
445,888 - PGA1_c04530 0.53 +0.2
445,890 + PGA1_c04530 0.54 -1.5
445,890 + PGA1_c04530 0.54 -0.3
445,940 + PGA1_c04530 0.60 +0.4
445,947 + PGA1_c04530 0.60 -0.3
445,947 + PGA1_c04530 0.60 +0.2
445,947 + PGA1_c04530 0.60 -1.1
445,947 + PGA1_c04530 0.60 -0.9
445,955 - PGA1_c04530 0.61 +1.0
445,963 + PGA1_c04530 0.62 +0.3
446,072 - PGA1_c04530 0.75 -0.8
446,077 + PGA1_c04530 0.76 +0.4
446,128 + PGA1_c04530 0.82 -1.3
446,140 - PGA1_c04530 0.83 +0.1
446,203 + +0.1
446,203 + +0.4
446,203 + +0.4
446,203 + -0.3
446,203 + +0.3
446,203 + +0.8
446,203 + +0.5
446,211 - +2.4
446,211 - +0.0
446,211 - +0.3
446,211 - +1.8
446,221 + -1.7
446,303 + +0.8
446,311 - -0.7
446,332 + +0.7
446,341 + -0.7
446,367 + +0.1
446,411 - -2.1
446,424 - -0.5
446,434 - +0.7
446,514 - -0.9
446,514 - +0.5
446,550 + PGA1_c04540 0.10 -2.1
446,563 + PGA1_c04540 0.11 -0.3
446,563 + PGA1_c04540 0.11 +0.3
446,571 - PGA1_c04540 0.12 +0.1
446,571 - PGA1_c04540 0.12 +0.5
446,581 - PGA1_c04540 0.13 +0.6
446,604 + PGA1_c04540 0.15 -0.4
446,613 + PGA1_c04540 0.15 -0.2
446,657 - PGA1_c04540 0.19 -0.3
446,672 + PGA1_c04540 0.20 +0.1
446,744 + PGA1_c04540 0.26 +0.3
446,794 - PGA1_c04540 0.30 -0.3
446,958 + PGA1_c04540 0.43 -2.1
446,961 - PGA1_c04540 0.44 +0.7
446,961 - PGA1_c04540 0.44 -0.7
447,038 + PGA1_c04540 0.50 +1.4
447,038 + PGA1_c04540 0.50 +1.2
447,043 + PGA1_c04540 0.50 -0.2
447,061 - PGA1_c04540 0.52 -0.5
447,169 + PGA1_c04540 0.61 -0.9
447,171 + PGA1_c04540 0.61 -0.1
447,171 + PGA1_c04540 0.61 +0.7
447,222 + PGA1_c04540 0.65 +2.0
447,222 - PGA1_c04540 0.65 +0.2
447,222 - PGA1_c04540 0.65 +0.8
447,235 + PGA1_c04540 0.66 +0.4
447,269 + PGA1_c04540 0.69 -0.1

Or see this region's nucleotide sequence