Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04490 and PGA1_c04500 are separated by 94 nucleotides PGA1_c04500 and PGA1_c04510 are separated by 47 nucleotides PGA1_c04510 and PGA1_c04520 are separated by 294 nucleotides
PGA1_c04490: PGA1_c04490 - indolepyruvate oxidoreductase, at 437,639 to 441,061
_c04490
PGA1_c04500: PGA1_c04500 - transcriptional regulator, AsnC family, at 441,156 to 441,671
_c04500
PGA1_c04510: PGA1_c04510 - Protein of unknown function (DUF3307)., at 441,719 to 442,111
_c04510
PGA1_c04520: PGA1_c04520 - putative ABC transporter cyclic nucleotide-binding protein, at 442,406 to 445,363
_c04520
Position (kb) 441
442
443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 440.739 kb on - strand at 440.758 kb on - strand at 440.773 kb on + strand at 440.776 kb on - strand at 440.784 kb on + strand at 440.786 kb on + strand at 440.791 kb on + strand at 440.791 kb on + strand at 440.896 kb on - strand at 440.915 kb on + strand at 440.952 kb on + strand at 440.968 kb on + strand at 440.971 kb on + strand at 440.976 kb on - strand at 440.990 kb on + strand at 441.033 kb on - strand at 441.040 kb on + strand at 441.178 kb on - strand at 441.241 kb on + strand, within PGA1_c04500 at 441.241 kb on + strand, within PGA1_c04500 at 441.247 kb on + strand, within PGA1_c04500 at 441.249 kb on - strand, within PGA1_c04500 at 441.249 kb on - strand, within PGA1_c04500 at 441.282 kb on + strand, within PGA1_c04500 at 441.282 kb on + strand, within PGA1_c04500 at 441.290 kb on - strand, within PGA1_c04500 at 441.317 kb on - strand, within PGA1_c04500 at 441.329 kb on + strand, within PGA1_c04500 at 441.337 kb on + strand, within PGA1_c04500 at 441.337 kb on + strand, within PGA1_c04500 at 441.345 kb on - strand, within PGA1_c04500 at 441.370 kb on - strand, within PGA1_c04500 at 441.389 kb on + strand, within PGA1_c04500 at 441.390 kb on - strand, within PGA1_c04500 at 441.397 kb on - strand, within PGA1_c04500 at 441.430 kb on - strand, within PGA1_c04500 at 441.453 kb on - strand, within PGA1_c04500 at 441.459 kb on + strand, within PGA1_c04500 at 441.467 kb on - strand, within PGA1_c04500 at 441.467 kb on - strand, within PGA1_c04500 at 441.469 kb on + strand, within PGA1_c04500 at 441.469 kb on + strand, within PGA1_c04500 at 441.474 kb on + strand, within PGA1_c04500 at 441.477 kb on - strand, within PGA1_c04500 at 441.479 kb on + strand, within PGA1_c04500 at 441.519 kb on - strand, within PGA1_c04500 at 441.519 kb on - strand, within PGA1_c04500 at 441.533 kb on - strand, within PGA1_c04500 at 441.534 kb on - strand, within PGA1_c04500 at 441.534 kb on - strand, within PGA1_c04500 at 441.552 kb on + strand, within PGA1_c04500 at 441.606 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.611 kb on - strand, within PGA1_c04500 at 441.616 kb on - strand, within PGA1_c04500 at 441.620 kb on + strand at 441.633 kb on - strand at 441.648 kb on - strand at 441.650 kb on - strand at 441.655 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.666 kb on + strand at 441.674 kb on - strand at 441.705 kb on - strand at 441.705 kb on - strand at 441.707 kb on + strand at 441.707 kb on + strand at 441.707 kb on + strand at 441.718 kb on - strand at 441.764 kb on + strand, within PGA1_c04510 at 441.779 kb on + strand, within PGA1_c04510 at 441.787 kb on - strand, within PGA1_c04510 at 441.787 kb on - strand, within PGA1_c04510 at 441.796 kb on + strand, within PGA1_c04510 at 441.801 kb on + strand, within PGA1_c04510 at 441.803 kb on + strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.811 kb on - strand, within PGA1_c04510 at 441.813 kb on + strand, within PGA1_c04510 at 441.813 kb on + strand, within PGA1_c04510 at 441.821 kb on - strand, within PGA1_c04510 at 441.821 kb on - strand, within PGA1_c04510 at 441.826 kb on - strand, within PGA1_c04510 at 441.853 kb on - strand, within PGA1_c04510 at 441.877 kb on + strand, within PGA1_c04510 at 441.882 kb on + strand, within PGA1_c04510 at 441.882 kb on + strand, within PGA1_c04510 at 441.884 kb on + strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.890 kb on - strand, within PGA1_c04510 at 441.892 kb on - strand, within PGA1_c04510 at 441.893 kb on - strand, within PGA1_c04510 at 441.920 kb on - strand, within PGA1_c04510 at 441.935 kb on - strand, within PGA1_c04510 at 441.969 kb on - strand, within PGA1_c04510 at 441.969 kb on - strand, within PGA1_c04510 at 441.977 kb on - strand, within PGA1_c04510 at 441.977 kb on - strand, within PGA1_c04510 at 442.062 kb on + strand, within PGA1_c04510 at 442.070 kb on - strand, within PGA1_c04510 at 442.074 kb on - strand at 442.074 kb on - strand at 442.074 kb on - strand at 442.084 kb on - strand at 442.093 kb on - strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.102 kb on + strand at 442.110 kb on - strand at 442.169 kb on + strand at 442.177 kb on + strand at 442.177 kb on - strand at 442.177 kb on - strand at 442.185 kb on - strand at 442.185 kb on - strand at 442.205 kb on + strand at 442.220 kb on + strand at 442.227 kb on - strand at 442.311 kb on + strand at 442.350 kb on + strand at 442.350 kb on + strand at 442.384 kb on + strand at 442.409 kb on + strand at 442.425 kb on - strand at 442.455 kb on + strand at 442.455 kb on - strand at 442.457 kb on - strand at 442.472 kb on - strand at 442.509 kb on + strand at 442.509 kb on + strand at 442.509 kb on + strand at 442.517 kb on - strand at 442.524 kb on + strand at 442.527 kb on - strand at 442.527 kb on - strand at 442.532 kb on - strand at 442.548 kb on + strand at 442.551 kb on - strand at 442.551 kb on - strand at 442.672 kb on + strand at 442.719 kb on + strand, within PGA1_c04520 at 442.723 kb on + strand, within PGA1_c04520 at 442.723 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.811 kb on + strand, within PGA1_c04520 at 442.816 kb on + strand, within PGA1_c04520 at 442.816 kb on + strand, within PGA1_c04520 at 442.819 kb on - strand, within PGA1_c04520 at 442.824 kb on - strand, within PGA1_c04520 at 442.894 kb on + strand, within PGA1_c04520 at 442.902 kb on - strand, within PGA1_c04520 at 442.923 kb on + strand, within PGA1_c04520 at 442.999 kb on + strand, within PGA1_c04520 at 443.032 kb on + strand, within PGA1_c04520 at 443.055 kb on - strand, within PGA1_c04520 at 443.068 kb on + strand, within PGA1_c04520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 440,739 - +0.6 440,758 - -0.0 440,773 + +0.7 440,776 - -1.4 440,784 + +0.2 440,786 + +1.0 440,791 + +0.0 440,791 + +0.8 440,896 - +0.7 440,915 + +0.3 440,952 + +1.0 440,968 + -0.2 440,971 + +0.6 440,976 - +0.8 440,990 + -1.1 441,033 - +0.7 441,040 + -0.8 441,178 - +1.2 441,241 + PGA1_c04500 0.16 -0.1 441,241 + PGA1_c04500 0.16 -0.3 441,247 + PGA1_c04500 0.18 +0.5 441,249 - PGA1_c04500 0.18 -0.7 441,249 - PGA1_c04500 0.18 +0.3 441,282 + PGA1_c04500 0.24 +0.2 441,282 + PGA1_c04500 0.24 -0.1 441,290 - PGA1_c04500 0.26 +0.9 441,317 - PGA1_c04500 0.31 -0.1 441,329 + PGA1_c04500 0.34 -0.2 441,337 + PGA1_c04500 0.35 +0.7 441,337 + PGA1_c04500 0.35 +0.5 441,345 - PGA1_c04500 0.37 +0.5 441,370 - PGA1_c04500 0.41 +0.2 441,389 + PGA1_c04500 0.45 +0.8 441,390 - PGA1_c04500 0.45 +0.6 441,397 - PGA1_c04500 0.47 -0.6 441,430 - PGA1_c04500 0.53 -0.7 441,453 - PGA1_c04500 0.58 +0.9 441,459 + PGA1_c04500 0.59 -0.2 441,467 - PGA1_c04500 0.60 -0.4 441,467 - PGA1_c04500 0.60 +0.4 441,469 + PGA1_c04500 0.61 +1.6 441,469 + PGA1_c04500 0.61 +0.7 441,474 + PGA1_c04500 0.62 +1.9 441,477 - PGA1_c04500 0.62 -1.4 441,479 + PGA1_c04500 0.63 +0.3 441,519 - PGA1_c04500 0.70 +2.2 441,519 - PGA1_c04500 0.70 -0.1 441,533 - PGA1_c04500 0.73 -0.6 441,534 - PGA1_c04500 0.73 +0.1 441,534 - PGA1_c04500 0.73 -1.3 441,552 + PGA1_c04500 0.77 -0.5 441,606 - PGA1_c04500 0.87 +0.5 441,611 - PGA1_c04500 0.88 +0.1 441,611 - PGA1_c04500 0.88 -0.2 441,611 - PGA1_c04500 0.88 +0.3 441,611 - PGA1_c04500 0.88 +0.5 441,611 - PGA1_c04500 0.88 -0.8 441,611 - PGA1_c04500 0.88 +0.3 441,616 - PGA1_c04500 0.89 +0.0 441,620 + -0.5 441,633 - -1.8 441,648 - -0.7 441,650 - +0.5 441,655 + +1.6 441,666 + -0.0 441,666 + -0.1 441,666 + -0.5 441,666 + -1.3 441,674 - +0.3 441,705 - -0.3 441,705 - +1.2 441,707 + +0.6 441,707 + +0.5 441,707 + -0.1 441,718 - +0.6 441,764 + PGA1_c04510 0.11 +1.4 441,779 + PGA1_c04510 0.15 +1.6 441,787 - PGA1_c04510 0.17 +0.8 441,787 - PGA1_c04510 0.17 +0.2 441,796 + PGA1_c04510 0.20 -0.1 441,801 + PGA1_c04510 0.21 +1.1 441,803 + PGA1_c04510 0.21 +1.7 441,811 - PGA1_c04510 0.23 -0.7 441,811 - PGA1_c04510 0.23 -0.7 441,811 - PGA1_c04510 0.23 -1.2 441,811 - PGA1_c04510 0.23 +0.3 441,811 - PGA1_c04510 0.23 +0.5 441,813 + PGA1_c04510 0.24 +0.3 441,813 + PGA1_c04510 0.24 +1.4 441,821 - PGA1_c04510 0.26 +1.3 441,821 - PGA1_c04510 0.26 +1.0 441,826 - PGA1_c04510 0.27 -0.5 441,853 - PGA1_c04510 0.34 -1.1 441,877 + PGA1_c04510 0.40 +2.2 441,882 + PGA1_c04510 0.41 +0.6 441,882 + PGA1_c04510 0.41 -0.9 441,884 + PGA1_c04510 0.42 -0.1 441,890 - PGA1_c04510 0.44 +0.5 441,890 - PGA1_c04510 0.44 -0.3 441,890 - PGA1_c04510 0.44 +0.7 441,892 - PGA1_c04510 0.44 +0.5 441,893 - PGA1_c04510 0.44 +0.9 441,920 - PGA1_c04510 0.51 +1.3 441,935 - PGA1_c04510 0.55 +1.1 441,969 - PGA1_c04510 0.64 +0.2 441,969 - PGA1_c04510 0.64 +1.5 441,977 - PGA1_c04510 0.66 -0.3 441,977 - PGA1_c04510 0.66 +1.1 442,062 + PGA1_c04510 0.87 +1.0 442,070 - PGA1_c04510 0.89 +1.2 442,074 - +1.1 442,074 - +0.7 442,074 - +0.1 442,084 - -0.1 442,093 - +0.1 442,102 + +2.4 442,102 + +1.4 442,102 + +0.8 442,102 + +0.3 442,102 + +0.2 442,102 + +2.3 442,110 - -0.0 442,169 + +0.7 442,177 + +0.2 442,177 - -0.0 442,177 - -0.5 442,185 - +1.1 442,185 - +0.1 442,205 + +0.7 442,220 + +0.3 442,227 - -0.8 442,311 + -0.8 442,350 + -2.1 442,350 + -0.3 442,384 + -0.8 442,409 + -0.5 442,425 - -1.5 442,455 + -2.3 442,455 - -0.9 442,457 - -2.8 442,472 - -2.1 442,509 + -2.5 442,509 + -3.9 442,509 + -0.8 442,517 - -0.3 442,524 + -1.7 442,527 - -1.5 442,527 - -1.5 442,532 - -0.2 442,548 + -0.8 442,551 - -1.3 442,551 - -1.3 442,672 + -0.1 442,719 + PGA1_c04520 0.11 +0.5 442,723 + PGA1_c04520 0.11 -0.9 442,723 + PGA1_c04520 0.11 -1.7 442,811 + PGA1_c04520 0.14 -2.7 442,811 + PGA1_c04520 0.14 -1.4 442,811 + PGA1_c04520 0.14 -1.6 442,816 + PGA1_c04520 0.14 +0.7 442,816 + PGA1_c04520 0.14 -0.9 442,819 - PGA1_c04520 0.14 -0.5 442,824 - PGA1_c04520 0.14 -2.1 442,894 + PGA1_c04520 0.16 -1.0 442,902 - PGA1_c04520 0.17 -1.0 442,923 + PGA1_c04520 0.17 +0.0 442,999 + PGA1_c04520 0.20 +0.1 443,032 + PGA1_c04520 0.21 -1.7 443,055 - PGA1_c04520 0.22 -0.8 443,068 + PGA1_c04520 0.22 -4.0
Or see this region's nucleotide sequence