Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g35 and HP15_p187g36 are separated by 104 nucleotides HP15_p187g36 and HP15_p187g37 are separated by 44 nucleotides HP15_p187g37 and HP15_p187g38 are separated by 23 nucleotides
HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771
_p187g35
HP15_p187g36: HP15_p187g36 - hypothetical protein, at 28,876 to 29,406
_p187g36
HP15_p187g37: HP15_p187g37 - integral membrane protein, transporter, at 29,451 to 31,496
_p187g37
HP15_p187g38: HP15_p187g38 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 31,520 to 32,551
_p187g38
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.581 kb on - strand, within HP15_p187g35 at 28.623 kb on + strand, within HP15_p187g35 at 28.631 kb on - strand, within HP15_p187g35 at 28.645 kb on + strand, within HP15_p187g35 at 28.693 kb on - strand at 28.693 kb on - strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.766 kb on + strand at 28.774 kb on - strand at 28.774 kb on - strand at 28.774 kb on - strand at 28.793 kb on - strand at 28.858 kb on + strand at 28.873 kb on + strand at 28.881 kb on - strand at 28.943 kb on + strand, within HP15_p187g36 at 28.943 kb on + strand, within HP15_p187g36 at 28.951 kb on - strand, within HP15_p187g36 at 29.014 kb on - strand, within HP15_p187g36 at 29.084 kb on + strand, within HP15_p187g36 at 29.092 kb on - strand, within HP15_p187g36 at 29.094 kb on + strand, within HP15_p187g36 at 29.107 kb on + strand, within HP15_p187g36 at 29.107 kb on + strand, within HP15_p187g36 at 29.108 kb on + strand, within HP15_p187g36 at 29.110 kb on - strand, within HP15_p187g36 at 29.145 kb on + strand, within HP15_p187g36 at 29.153 kb on - strand, within HP15_p187g36 at 29.153 kb on - strand, within HP15_p187g36 at 29.252 kb on - strand, within HP15_p187g36 at 29.271 kb on + strand, within HP15_p187g36 at 29.318 kb on + strand, within HP15_p187g36 at 29.318 kb on + strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.326 kb on - strand, within HP15_p187g36 at 29.388 kb on + strand at 29.448 kb on + strand at 29.448 kb on + strand at 29.456 kb on - strand at 29.461 kb on + strand at 29.469 kb on - strand at 29.487 kb on + strand at 29.512 kb on - strand at 29.662 kb on - strand, within HP15_p187g37 at 29.662 kb on - strand, within HP15_p187g37 at 29.741 kb on + strand, within HP15_p187g37 at 29.817 kb on - strand, within HP15_p187g37 at 29.832 kb on - strand, within HP15_p187g37 at 29.864 kb on - strand, within HP15_p187g37 at 29.913 kb on + strand, within HP15_p187g37 at 29.997 kb on - strand, within HP15_p187g37 at 30.030 kb on - strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.039 kb on + strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.047 kb on - strand, within HP15_p187g37 at 30.057 kb on - strand, within HP15_p187g37 at 30.073 kb on - strand, within HP15_p187g37 at 30.085 kb on - strand, within HP15_p187g37 at 30.142 kb on - strand, within HP15_p187g37 at 30.214 kb on + strand, within HP15_p187g37 at 30.288 kb on + strand, within HP15_p187g37 at 30.296 kb on - strand, within HP15_p187g37 at 30.353 kb on + strand, within HP15_p187g37 at 30.361 kb on - strand, within HP15_p187g37 at 30.491 kb on - strand, within HP15_p187g37 at 30.491 kb on - strand, within HP15_p187g37 at 30.532 kb on - strand, within HP15_p187g37 at 30.540 kb on + strand, within HP15_p187g37 at 30.574 kb on + strand, within HP15_p187g37 at 30.593 kb on + strand, within HP15_p187g37 at 30.610 kb on + strand, within HP15_p187g37 at 30.674 kb on + strand, within HP15_p187g37 at 30.711 kb on + strand, within HP15_p187g37 at 30.711 kb on + strand, within HP15_p187g37 at 30.714 kb on - strand, within HP15_p187g37 at 30.714 kb on - strand, within HP15_p187g37 at 30.719 kb on - strand, within HP15_p187g37 at 30.731 kb on - strand, within HP15_p187g37 at 30.756 kb on + strand, within HP15_p187g37 at 30.764 kb on - strand, within HP15_p187g37 at 30.773 kb on - strand, within HP15_p187g37 at 30.781 kb on + strand, within HP15_p187g37 at 30.869 kb on + strand, within HP15_p187g37 at 30.878 kb on + strand, within HP15_p187g37 at 30.886 kb on - strand, within HP15_p187g37 at 30.960 kb on + strand, within HP15_p187g37 at 31.023 kb on + strand, within HP15_p187g37 at 31.052 kb on + strand, within HP15_p187g37 at 31.091 kb on - strand, within HP15_p187g37 at 31.091 kb on - strand, within HP15_p187g37 at 31.128 kb on + strand, within HP15_p187g37 at 31.136 kb on - strand, within HP15_p187g37 at 31.143 kb on + strand, within HP15_p187g37 at 31.148 kb on - strand, within HP15_p187g37 at 31.151 kb on - strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.169 kb on + strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.177 kb on - strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.219 kb on + strand, within HP15_p187g37 at 31.227 kb on - strand, within HP15_p187g37 at 31.300 kb on + strand at 31.347 kb on + strand at 31.355 kb on - strand at 31.355 kb on - strand at 31.357 kb on + strand at 31.380 kb on - strand at 31.384 kb on + strand at 31.384 kb on + strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.392 kb on - strand at 31.396 kb on + strand at 31.396 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.430 kb on + strand at 31.436 kb on + strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.438 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.464 kb on - strand at 31.484 kb on + strand at 31.536 kb on + strand at 31.536 kb on + strand at 31.536 kb on + strand at 31.543 kb on + strand at 31.623 kb on + strand at 31.631 kb on - strand, within HP15_p187g38 at 31.650 kb on - strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.677 kb on + strand, within HP15_p187g38 at 31.685 kb on - strand, within HP15_p187g38 at 31.685 kb on - strand, within HP15_p187g38 at 31.714 kb on + strand, within HP15_p187g38 at 31.749 kb on + strand, within HP15_p187g38 at 31.774 kb on - strand, within HP15_p187g38 at 31.787 kb on + strand, within HP15_p187g38 at 31.862 kb on + strand, within HP15_p187g38 at 31.867 kb on + strand, within HP15_p187g38 at 31.881 kb on + strand, within HP15_p187g38 at 31.881 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.883 kb on + strand, within HP15_p187g38 at 31.889 kb on - strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.890 kb on + strand, within HP15_p187g38 at 31.891 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.898 kb on - strand, within HP15_p187g38 at 31.936 kb on - strand, within HP15_p187g38 at 31.943 kb on + strand, within HP15_p187g38 at 31.988 kb on + strand, within HP15_p187g38 at 31.989 kb on + strand, within HP15_p187g38 at 31.996 kb on + strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 31.998 kb on - strand, within HP15_p187g38 at 32.049 kb on - strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.143 kb on + strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.151 kb on - strand, within HP15_p187g38 at 32.180 kb on + strand, within HP15_p187g38 at 32.193 kb on - strand, within HP15_p187g38 at 32.233 kb on - strand, within HP15_p187g38 at 32.249 kb on - strand, within HP15_p187g38 at 32.277 kb on + strand, within HP15_p187g38 at 32.280 kb on - strand, within HP15_p187g38 at 32.285 kb on - strand, within HP15_p187g38 at 32.285 kb on - strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.349 kb on + strand, within HP15_p187g38 at 32.355 kb on + strand, within HP15_p187g38 at 32.356 kb on + strand, within HP15_p187g38 at 32.357 kb on - strand, within HP15_p187g38 at 32.464 kb on - strand at 32.476 kb on + strand at 32.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 28,581 - HP15_p187g35 0.77 -0.6 28,623 + HP15_p187g35 0.82 +0.1 28,631 - HP15_p187g35 0.83 -0.7 28,645 + HP15_p187g35 0.85 -0.5 28,693 - +0.1 28,693 - -0.2 28,766 + +0.3 28,766 + +0.2 28,766 + -0.2 28,766 + -1.1 28,766 + +0.3 28,774 - -0.2 28,774 - +0.6 28,774 - -0.7 28,793 - +0.3 28,858 + -0.1 28,873 + +1.0 28,881 - +0.7 28,943 + HP15_p187g36 0.13 +0.3 28,943 + HP15_p187g36 0.13 -1.0 28,951 - HP15_p187g36 0.14 +0.3 29,014 - HP15_p187g36 0.26 +0.1 29,084 + HP15_p187g36 0.39 -0.1 29,092 - HP15_p187g36 0.41 +0.4 29,094 + HP15_p187g36 0.41 -0.2 29,107 + HP15_p187g36 0.44 -0.1 29,107 + HP15_p187g36 0.44 -0.1 29,108 + HP15_p187g36 0.44 +0.2 29,110 - HP15_p187g36 0.44 -2.9 29,145 + HP15_p187g36 0.51 -0.9 29,153 - HP15_p187g36 0.52 -1.3 29,153 - HP15_p187g36 0.52 +0.3 29,252 - HP15_p187g36 0.71 +0.0 29,271 + HP15_p187g36 0.74 -2.1 29,318 + HP15_p187g36 0.83 +0.3 29,318 + HP15_p187g36 0.83 +0.3 29,326 - HP15_p187g36 0.85 +0.3 29,326 - HP15_p187g36 0.85 -0.4 29,326 - HP15_p187g36 0.85 -0.2 29,388 + -1.1 29,448 + +0.3 29,448 + -0.5 29,456 - -0.4 29,461 + -0.5 29,469 - +0.7 29,487 + -0.4 29,512 - +0.0 29,662 - HP15_p187g37 0.10 +1.6 29,662 - HP15_p187g37 0.10 +0.3 29,741 + HP15_p187g37 0.14 -0.5 29,817 - HP15_p187g37 0.18 -0.2 29,832 - HP15_p187g37 0.19 -0.7 29,864 - HP15_p187g37 0.20 -0.2 29,913 + HP15_p187g37 0.23 -2.1 29,997 - HP15_p187g37 0.27 +0.5 30,030 - HP15_p187g37 0.28 -0.3 30,039 + HP15_p187g37 0.29 -0.9 30,039 + HP15_p187g37 0.29 -0.1 30,039 + HP15_p187g37 0.29 +0.3 30,047 - HP15_p187g37 0.29 +0.3 30,047 - HP15_p187g37 0.29 +0.3 30,047 - HP15_p187g37 0.29 +0.6 30,047 - HP15_p187g37 0.29 -0.6 30,057 - HP15_p187g37 0.30 -0.6 30,073 - HP15_p187g37 0.30 -0.3 30,085 - HP15_p187g37 0.31 +0.3 30,142 - HP15_p187g37 0.34 -0.2 30,214 + HP15_p187g37 0.37 +0.6 30,288 + HP15_p187g37 0.41 +0.4 30,296 - HP15_p187g37 0.41 -1.8 30,353 + HP15_p187g37 0.44 -0.1 30,361 - HP15_p187g37 0.44 -0.8 30,491 - HP15_p187g37 0.51 -0.2 30,491 - HP15_p187g37 0.51 -0.3 30,532 - HP15_p187g37 0.53 -0.7 30,540 + HP15_p187g37 0.53 -0.7 30,574 + HP15_p187g37 0.55 +0.7 30,593 + HP15_p187g37 0.56 +0.4 30,610 + HP15_p187g37 0.57 +0.3 30,674 + HP15_p187g37 0.60 -0.2 30,711 + HP15_p187g37 0.62 +0.1 30,711 + HP15_p187g37 0.62 -0.1 30,714 - HP15_p187g37 0.62 -1.6 30,714 - HP15_p187g37 0.62 -0.7 30,719 - HP15_p187g37 0.62 -0.1 30,731 - HP15_p187g37 0.63 -0.1 30,756 + HP15_p187g37 0.64 +0.3 30,764 - HP15_p187g37 0.64 +0.0 30,773 - HP15_p187g37 0.65 +1.4 30,781 + HP15_p187g37 0.65 -0.1 30,869 + HP15_p187g37 0.69 -0.1 30,878 + HP15_p187g37 0.70 -0.6 30,886 - HP15_p187g37 0.70 +0.0 30,960 + HP15_p187g37 0.74 +0.6 31,023 + HP15_p187g37 0.77 -0.3 31,052 + HP15_p187g37 0.78 -1.1 31,091 - HP15_p187g37 0.80 +1.7 31,091 - HP15_p187g37 0.80 +0.8 31,128 + HP15_p187g37 0.82 +0.6 31,136 - HP15_p187g37 0.82 +0.1 31,143 + HP15_p187g37 0.83 -0.3 31,148 - HP15_p187g37 0.83 -0.1 31,151 - HP15_p187g37 0.83 -0.5 31,169 + HP15_p187g37 0.84 -0.3 31,169 + HP15_p187g37 0.84 -0.1 31,169 + HP15_p187g37 0.84 +0.3 31,177 - HP15_p187g37 0.84 +0.0 31,177 - HP15_p187g37 0.84 +0.3 31,177 - HP15_p187g37 0.84 -0.7 31,177 - HP15_p187g37 0.84 -1.3 31,177 - HP15_p187g37 0.84 -1.3 31,177 - HP15_p187g37 0.84 -1.0 31,219 + HP15_p187g37 0.86 +0.3 31,219 + HP15_p187g37 0.86 +0.0 31,219 + HP15_p187g37 0.86 -1.0 31,227 - HP15_p187g37 0.87 -0.4 31,300 + +0.3 31,347 + +0.5 31,355 - -1.3 31,355 - -0.1 31,357 + +0.3 31,380 - -0.4 31,384 + -2.3 31,384 + +0.1 31,392 - -0.2 31,392 - +0.2 31,392 - -0.3 31,392 - -0.9 31,396 + -0.4 31,396 + -2.1 31,430 + +0.8 31,430 + -1.7 31,430 + +0.2 31,430 + +0.3 31,430 + +0.2 31,430 + -0.9 31,430 + -0.0 31,430 + -0.3 31,430 + +0.8 31,430 + -0.7 31,430 + +0.5 31,436 + +0.8 31,438 - -1.1 31,438 - +0.3 31,438 - +0.7 31,438 - +0.3 31,438 - -0.2 31,438 - -1.4 31,438 - -0.8 31,438 - +1.3 31,438 - +0.8 31,438 - +0.3 31,438 - +0.5 31,438 - -0.9 31,464 - +0.3 31,464 - +1.8 31,464 - +0.6 31,464 - -1.3 31,464 - -0.1 31,484 + +0.3 31,536 + +0.4 31,536 + +0.3 31,536 + -0.5 31,543 + +0.3 31,623 + +1.0 31,631 - HP15_p187g38 0.11 -0.1 31,650 - HP15_p187g38 0.13 +1.3 31,677 + HP15_p187g38 0.15 -0.2 31,677 + HP15_p187g38 0.15 -0.3 31,677 + HP15_p187g38 0.15 -0.1 31,677 + HP15_p187g38 0.15 +0.7 31,677 + HP15_p187g38 0.15 +0.2 31,677 + HP15_p187g38 0.15 -0.3 31,677 + HP15_p187g38 0.15 +0.8 31,677 + HP15_p187g38 0.15 +0.2 31,677 + HP15_p187g38 0.15 -0.7 31,685 - HP15_p187g38 0.16 +0.8 31,685 - HP15_p187g38 0.16 +0.4 31,714 + HP15_p187g38 0.19 +1.0 31,749 + HP15_p187g38 0.22 +0.1 31,774 - HP15_p187g38 0.25 -0.3 31,787 + HP15_p187g38 0.26 +0.0 31,862 + HP15_p187g38 0.33 -0.5 31,867 + HP15_p187g38 0.34 -0.7 31,881 + HP15_p187g38 0.35 +0.0 31,881 + HP15_p187g38 0.35 +0.4 31,883 + HP15_p187g38 0.35 -0.4 31,883 + HP15_p187g38 0.35 -0.9 31,883 + HP15_p187g38 0.35 +1.3 31,883 + HP15_p187g38 0.35 +0.2 31,889 - HP15_p187g38 0.36 -0.6 31,890 + HP15_p187g38 0.36 -0.3 31,890 + HP15_p187g38 0.36 +0.5 31,890 + HP15_p187g38 0.36 -0.7 31,890 + HP15_p187g38 0.36 +0.3 31,890 + HP15_p187g38 0.36 +0.3 31,891 - HP15_p187g38 0.36 -1.3 31,898 - HP15_p187g38 0.37 -1.0 31,898 - HP15_p187g38 0.37 +0.8 31,898 - HP15_p187g38 0.37 +1.2 31,898 - HP15_p187g38 0.37 +0.8 31,898 - HP15_p187g38 0.37 +0.3 31,898 - HP15_p187g38 0.37 +1.0 31,936 - HP15_p187g38 0.40 -1.2 31,943 + HP15_p187g38 0.41 +0.5 31,988 + HP15_p187g38 0.45 +0.3 31,989 + HP15_p187g38 0.45 -0.3 31,996 + HP15_p187g38 0.46 +0.3 31,998 - HP15_p187g38 0.46 -1.6 31,998 - HP15_p187g38 0.46 -1.3 31,998 - HP15_p187g38 0.46 -0.7 32,049 - HP15_p187g38 0.51 +0.0 32,143 + HP15_p187g38 0.60 +1.2 32,143 + HP15_p187g38 0.60 -0.7 32,143 + HP15_p187g38 0.60 +0.1 32,151 - HP15_p187g38 0.61 -2.1 32,151 - HP15_p187g38 0.61 +1.3 32,151 - HP15_p187g38 0.61 +1.3 32,151 - HP15_p187g38 0.61 -0.7 32,180 + HP15_p187g38 0.64 +0.3 32,193 - HP15_p187g38 0.65 +0.2 32,233 - HP15_p187g38 0.69 -0.1 32,249 - HP15_p187g38 0.71 +0.2 32,277 + HP15_p187g38 0.73 +0.3 32,280 - HP15_p187g38 0.74 -0.1 32,285 - HP15_p187g38 0.74 +2.1 32,285 - HP15_p187g38 0.74 +0.1 32,349 + HP15_p187g38 0.80 +0.3 32,349 + HP15_p187g38 0.80 +0.4 32,349 + HP15_p187g38 0.80 -0.3 32,349 + HP15_p187g38 0.80 +0.6 32,349 + HP15_p187g38 0.80 -0.0 32,355 + HP15_p187g38 0.81 +1.3 32,356 + HP15_p187g38 0.81 -0.5 32,357 - HP15_p187g38 0.81 -0.6 32,464 - +0.7 32,476 + -0.4 32,496 - -0.4
Or see this region's nucleotide sequence