Strain Fitness in Marinobacter adhaerens HP15 around HP15_4178

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4177 and HP15_4178 are separated by 16 nucleotidesHP15_4178 and HP15_4179 overlap by 1 nucleotides HP15_4177: HP15_4177 - acetyl-CoA synthetase, at 4,416,268 to 4,418,256 _4177 HP15_4178: HP15_4178 - pyruvate carboxyltransferase, at 4,418,273 to 4,419,184 _4178 HP15_4179: HP15_4179 - methylcrotonyl-CoA carboxylase, alpha subunit, at 4,419,184 to 4,421,178 _4179 Position (kb) 4418 4419 4420Strain fitness (log2 ratio) -1 0 1at 4417.486 kb on + strand, within HP15_4177at 4417.586 kb on + strand, within HP15_4177at 4417.593 kb on + strand, within HP15_4177at 4417.773 kb on - strand, within HP15_4177at 4417.773 kb on - strand, within HP15_4177at 4417.893 kb on - strand, within HP15_4177at 4417.893 kb on - strand, within HP15_4177at 4417.912 kb on + strand, within HP15_4177at 4417.975 kb on + strand, within HP15_4177at 4417.975 kb on + strand, within HP15_4177at 4418.021 kb on - strand, within HP15_4177at 4418.069 kb on + strandat 4418.098 kb on - strandat 4418.121 kb on - strandat 4418.157 kb on + strandat 4418.157 kb on + strandat 4418.165 kb on - strandat 4418.176 kb on - strandat 4418.450 kb on - strand, within HP15_4178at 4418.461 kb on - strand, within HP15_4178at 4418.595 kb on - strand, within HP15_4178at 4418.710 kb on + strand, within HP15_4178at 4418.813 kb on + strand, within HP15_4178at 4418.952 kb on - strand, within HP15_4178at 4419.061 kb on - strand, within HP15_4178at 4419.574 kb on + strand, within HP15_4179at 4419.591 kb on - strand, within HP15_4179at 4420.064 kb on - strand, within HP15_4179

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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4,417,486 + HP15_4177 0.61 +0.4
4,417,586 + HP15_4177 0.66 -0.4
4,417,593 + HP15_4177 0.67 +0.4
4,417,773 - HP15_4177 0.76 -0.2
4,417,773 - HP15_4177 0.76 -0.7
4,417,893 - HP15_4177 0.82 +0.7
4,417,893 - HP15_4177 0.82 +0.5
4,417,912 + HP15_4177 0.83 +0.1
4,417,975 + HP15_4177 0.86 -0.2
4,417,975 + HP15_4177 0.86 -1.4
4,418,021 - HP15_4177 0.88 +1.7
4,418,069 + +0.3
4,418,098 - +0.1
4,418,121 - -0.9
4,418,157 + -0.5
4,418,157 + -0.5
4,418,165 - -0.2
4,418,176 - +0.0
4,418,450 - HP15_4178 0.19 +0.2
4,418,461 - HP15_4178 0.21 -0.1
4,418,595 - HP15_4178 0.35 -0.9
4,418,710 + HP15_4178 0.48 +0.1
4,418,813 + HP15_4178 0.59 -0.2
4,418,952 - HP15_4178 0.74 +0.1
4,419,061 - HP15_4178 0.86 -0.6
4,419,574 + HP15_4179 0.20 -0.5
4,419,591 - HP15_4179 0.20 +0.2
4,420,064 - HP15_4179 0.44 +0.8

Or see this region's nucleotide sequence