Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3932 and HP15_3933 are separated by 308 nucleotides HP15_3933 and HP15_3934 are separated by 81 nucleotides HP15_3934 and HP15_3935 are separated by 21 nucleotides
HP15_3932: HP15_3932 - CBS domain containing protein, at 4,160,531 to 4,161,130
_3932
HP15_3933: HP15_3933 - hypothetical protein, at 4,161,439 to 4,161,600
_3933
HP15_3934: HP15_3934 - acetyl-CoA carboxylase biotin carboxylase subunit, at 4,161,682 to 4,163,103
_3934
HP15_3935: HP15_3935 - pyruvate carboxylase subunit B, at 4,163,125 to 4,164,924
_3935
Position (kb) 4161
4162
4163
4164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4160.702 kb on + strand, within HP15_3932 at 4160.814 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.839 kb on + strand, within HP15_3932 at 4160.935 kb on + strand, within HP15_3932 at 4161.020 kb on + strand, within HP15_3932 at 4161.153 kb on + strand at 4161.272 kb on - strand at 4161.330 kb on - strand at 4161.333 kb on + strand at 4161.460 kb on + strand, within HP15_3933 at 4161.462 kb on - strand, within HP15_3933 at 4161.508 kb on - strand, within HP15_3933 at 4161.539 kb on + strand, within HP15_3933 at 4161.739 kb on - strand at 4161.861 kb on + strand, within HP15_3934 at 4161.873 kb on - strand, within HP15_3934 at 4162.095 kb on + strand, within HP15_3934 at 4162.108 kb on - strand, within HP15_3934 at 4162.246 kb on + strand, within HP15_3934 at 4162.252 kb on + strand, within HP15_3934 at 4162.292 kb on - strand, within HP15_3934 at 4162.455 kb on + strand, within HP15_3934 at 4162.557 kb on + strand, within HP15_3934 at 4162.714 kb on + strand, within HP15_3934 at 4162.769 kb on + strand, within HP15_3934 at 4162.777 kb on - strand, within HP15_3934 at 4162.794 kb on + strand, within HP15_3934 at 4162.986 kb on + strand at 4163.178 kb on + strand at 4163.243 kb on - strand at 4163.244 kb on - strand at 4163.262 kb on - strand at 4163.289 kb on - strand at 4163.389 kb on - strand, within HP15_3935 at 4163.559 kb on + strand, within HP15_3935 at 4163.567 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.615 kb on - strand, within HP15_3935 at 4163.652 kb on + strand, within HP15_3935 at 4163.670 kb on - strand, within HP15_3935 at 4163.675 kb on - strand, within HP15_3935 at 4163.684 kb on + strand, within HP15_3935 at 4163.692 kb on - strand, within HP15_3935 at 4163.714 kb on + strand, within HP15_3935 at 4163.771 kb on - strand, within HP15_3935 at 4163.890 kb on - strand, within HP15_3935 at 4163.906 kb on + strand, within HP15_3935 at 4163.914 kb on - strand, within HP15_3935 at 4163.919 kb on + strand, within HP15_3935 at 4163.995 kb on - strand, within HP15_3935 at 4163.997 kb on - strand, within HP15_3935 at 4164.016 kb on - strand, within HP15_3935 at 4164.032 kb on + strand, within HP15_3935 at 4164.041 kb on - strand, within HP15_3935
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 4,160,702 + HP15_3932 0.28 -1.3 4,160,814 + HP15_3932 0.47 -0.2 4,160,839 + HP15_3932 0.51 +0.9 4,160,839 + HP15_3932 0.51 -0.1 4,160,935 + HP15_3932 0.67 -0.7 4,161,020 + HP15_3932 0.81 +0.4 4,161,153 + +0.0 4,161,272 - +0.3 4,161,330 - -0.6 4,161,333 + -1.0 4,161,460 + HP15_3933 0.13 +0.2 4,161,462 - HP15_3933 0.14 +0.0 4,161,508 - HP15_3933 0.43 -1.0 4,161,539 + HP15_3933 0.62 -0.4 4,161,739 - +0.4 4,161,861 + HP15_3934 0.13 -0.0 4,161,873 - HP15_3934 0.13 +0.4 4,162,095 + HP15_3934 0.29 -1.4 4,162,108 - HP15_3934 0.30 -0.5 4,162,246 + HP15_3934 0.40 -0.6 4,162,252 + HP15_3934 0.40 +0.0 4,162,292 - HP15_3934 0.43 +0.4 4,162,455 + HP15_3934 0.54 -0.0 4,162,557 + HP15_3934 0.62 -0.3 4,162,714 + HP15_3934 0.73 -0.2 4,162,769 + HP15_3934 0.76 -1.3 4,162,777 - HP15_3934 0.77 -1.1 4,162,794 + HP15_3934 0.78 -0.6 4,162,986 + -0.9 4,163,178 + -0.2 4,163,243 - +0.2 4,163,244 - +0.1 4,163,262 - -0.5 4,163,289 - -0.4 4,163,389 - HP15_3935 0.15 +1.0 4,163,559 + HP15_3935 0.24 -0.4 4,163,567 - HP15_3935 0.25 -0.0 4,163,615 - HP15_3935 0.27 +0.0 4,163,615 - HP15_3935 0.27 -1.0 4,163,615 - HP15_3935 0.27 +0.1 4,163,652 + HP15_3935 0.29 +0.2 4,163,670 - HP15_3935 0.30 -0.4 4,163,675 - HP15_3935 0.31 -0.1 4,163,684 + HP15_3935 0.31 +2.5 4,163,692 - HP15_3935 0.32 +0.6 4,163,714 + HP15_3935 0.33 -0.4 4,163,771 - HP15_3935 0.36 +1.7 4,163,890 - HP15_3935 0.42 +0.5 4,163,906 + HP15_3935 0.43 -0.3 4,163,914 - HP15_3935 0.44 +1.0 4,163,919 + HP15_3935 0.44 +0.2 4,163,995 - HP15_3935 0.48 -1.2 4,163,997 - HP15_3935 0.48 -0.1 4,164,016 - HP15_3935 0.49 +0.0 4,164,032 + HP15_3935 0.50 -1.8 4,164,041 - HP15_3935 0.51 +0.2
Or see this region's nucleotide sequence