Strain Fitness in Marinobacter adhaerens HP15 around HP15_3842

Experiment: m.b. Paraquat dichloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3841 and HP15_3842 are separated by 7 nucleotidesHP15_3842 and HP15_3843 are separated by 193 nucleotides HP15_3841: HP15_3841 - iron(III) ABC transporter permease protein, at 4,066,635 to 4,068,347 _3841 HP15_3842: HP15_3842 - iron(III) ABC transporter, ATP-binding protein, at 4,068,355 to 4,069,470 _3842 HP15_3843: HP15_3843 - iron(III) ABC transporter, periplasmic iron-compound-binding protein, at 4,069,664 to 4,070,686 _3843 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -3 -2 -1 0 1at 4067.356 kb on - strand, within HP15_3841at 4067.364 kb on + strand, within HP15_3841at 4067.400 kb on - strand, within HP15_3841at 4067.516 kb on + strand, within HP15_3841at 4067.516 kb on + strand, within HP15_3841at 4067.524 kb on - strand, within HP15_3841at 4067.555 kb on + strand, within HP15_3841at 4067.615 kb on - strand, within HP15_3841at 4067.869 kb on - strand, within HP15_3841at 4067.869 kb on - strand, within HP15_3841at 4067.941 kb on + strand, within HP15_3841at 4067.959 kb on - strand, within HP15_3841at 4067.959 kb on - strand, within HP15_3841at 4068.005 kb on - strand, within HP15_3841at 4068.017 kb on + strand, within HP15_3841at 4068.018 kb on + strand, within HP15_3841at 4068.112 kb on - strand, within HP15_3841at 4068.140 kb on - strand, within HP15_3841at 4068.257 kb on - strandat 4068.520 kb on + strand, within HP15_3842at 4068.528 kb on - strand, within HP15_3842at 4068.608 kb on + strand, within HP15_3842at 4068.632 kb on + strand, within HP15_3842at 4068.667 kb on + strand, within HP15_3842at 4068.670 kb on + strand, within HP15_3842at 4068.675 kb on - strand, within HP15_3842at 4068.675 kb on - strand, within HP15_3842at 4068.675 kb on - strand, within HP15_3842at 4068.689 kb on + strand, within HP15_3842at 4068.697 kb on - strand, within HP15_3842at 4068.745 kb on + strand, within HP15_3842at 4068.779 kb on + strand, within HP15_3842at 4068.837 kb on + strand, within HP15_3842at 4068.856 kb on - strand, within HP15_3842at 4068.884 kb on - strand, within HP15_3842at 4068.970 kb on + strand, within HP15_3842at 4068.970 kb on + strand, within HP15_3842at 4068.983 kb on - strand, within HP15_3842at 4069.056 kb on - strand, within HP15_3842at 4069.056 kb on - strand, within HP15_3842at 4069.106 kb on + strand, within HP15_3842at 4069.117 kb on + strand, within HP15_3842at 4069.209 kb on - strand, within HP15_3842at 4069.220 kb on - strand, within HP15_3842at 4069.947 kb on + strand, within HP15_3843at 4069.970 kb on + strand, within HP15_3843at 4069.978 kb on - strand, within HP15_3843at 4069.978 kb on - strand, within HP15_3843at 4070.013 kb on + strand, within HP15_3843at 4070.033 kb on - strand, within HP15_3843at 4070.033 kb on - strand, within HP15_3843at 4070.104 kb on + strand, within HP15_3843at 4070.110 kb on + strand, within HP15_3843at 4070.140 kb on + strand, within HP15_3843at 4070.176 kb on - strand, within HP15_3843at 4070.224 kb on + strand, within HP15_3843at 4070.251 kb on + strand, within HP15_3843at 4070.254 kb on + strand, within HP15_3843at 4070.270 kb on + strand, within HP15_3843at 4070.270 kb on + strand, within HP15_3843at 4070.297 kb on + strand, within HP15_3843at 4070.329 kb on - strand, within HP15_3843at 4070.341 kb on + strand, within HP15_3843at 4070.355 kb on + strand, within HP15_3843at 4070.384 kb on - strand, within HP15_3843at 4070.412 kb on + strand, within HP15_3843

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml
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4,067,356 - HP15_3841 0.42 -1.4
4,067,364 + HP15_3841 0.43 -2.2
4,067,400 - HP15_3841 0.45 -1.7
4,067,516 + HP15_3841 0.51 -1.8
4,067,516 + HP15_3841 0.51 +0.4
4,067,524 - HP15_3841 0.52 -2.6
4,067,555 + HP15_3841 0.54 -1.2
4,067,615 - HP15_3841 0.57 -1.0
4,067,869 - HP15_3841 0.72 -1.2
4,067,869 - HP15_3841 0.72 -2.3
4,067,941 + HP15_3841 0.76 -1.5
4,067,959 - HP15_3841 0.77 -1.0
4,067,959 - HP15_3841 0.77 -1.8
4,068,005 - HP15_3841 0.80 -1.0
4,068,017 + HP15_3841 0.81 -0.1
4,068,018 + HP15_3841 0.81 +0.1
4,068,112 - HP15_3841 0.86 -2.6
4,068,140 - HP15_3841 0.88 -1.7
4,068,257 - -1.2
4,068,520 + HP15_3842 0.15 -0.3
4,068,528 - HP15_3842 0.16 -0.8
4,068,608 + HP15_3842 0.23 -0.8
4,068,632 + HP15_3842 0.25 +0.0
4,068,667 + HP15_3842 0.28 -0.5
4,068,670 + HP15_3842 0.28 -1.0
4,068,675 - HP15_3842 0.29 -0.4
4,068,675 - HP15_3842 0.29 -1.2
4,068,675 - HP15_3842 0.29 -0.2
4,068,689 + HP15_3842 0.30 -1.3
4,068,697 - HP15_3842 0.31 -0.0
4,068,745 + HP15_3842 0.35 -0.1
4,068,779 + HP15_3842 0.38 -0.9
4,068,837 + HP15_3842 0.43 -1.8
4,068,856 - HP15_3842 0.45 -0.8
4,068,884 - HP15_3842 0.47 +0.1
4,068,970 + HP15_3842 0.55 -0.8
4,068,970 + HP15_3842 0.55 +0.2
4,068,983 - HP15_3842 0.56 -0.9
4,069,056 - HP15_3842 0.63 -1.3
4,069,056 - HP15_3842 0.63 -1.4
4,069,106 + HP15_3842 0.67 -0.4
4,069,117 + HP15_3842 0.68 -2.9
4,069,209 - HP15_3842 0.77 -0.9
4,069,220 - HP15_3842 0.78 -1.0
4,069,947 + HP15_3843 0.28 -2.0
4,069,970 + HP15_3843 0.30 -0.6
4,069,978 - HP15_3843 0.31 -1.4
4,069,978 - HP15_3843 0.31 -1.9
4,070,013 + HP15_3843 0.34 -0.7
4,070,033 - HP15_3843 0.36 -1.0
4,070,033 - HP15_3843 0.36 -0.6
4,070,104 + HP15_3843 0.43 -0.5
4,070,110 + HP15_3843 0.44 +0.3
4,070,140 + HP15_3843 0.47 -2.6
4,070,176 - HP15_3843 0.50 -2.1
4,070,224 + HP15_3843 0.55 +0.0
4,070,251 + HP15_3843 0.57 +0.2
4,070,254 + HP15_3843 0.58 -2.1
4,070,270 + HP15_3843 0.59 -0.5
4,070,270 + HP15_3843 0.59 -0.8
4,070,297 + HP15_3843 0.62 -0.6
4,070,329 - HP15_3843 0.65 +0.2
4,070,341 + HP15_3843 0.66 -1.8
4,070,355 + HP15_3843 0.68 -1.7
4,070,384 - HP15_3843 0.70 -1.8
4,070,412 + HP15_3843 0.73 -0.3

Or see this region's nucleotide sequence